Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  366 bits (939), Expect = e-105
 Identities = 213/529 (40%), Positives = 312/529 (58%), Gaps = 19/529 (3%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MRNNQPVTQ+E  +P    L+STT L   I Y +  F +V+G+  DEL+  PHN+VRHPD
Sbjct: 1   MRNNQPVTQREYAFPDQQRLVSTTDLKGQITYCNNIFVEVSGFDRDELIRAPHNLVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGK-VVEYQSVRLCPS 119
           +PP  F  MW  LK GK WMG+VKNR K GDHYWV+A+ +PI +  + V  Y+SVR  P+
Sbjct: 61  VPPAVFDHMWTTLKQGKPWMGIVKNRRKTGDHYWVNAYVTPILDQQRQVTGYESVRTKPT 120

Query: 120 RQHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRL-----------GLGFIVAAGVSFAAD 168
           R+ V  A+ LY+ I +GK+     +P++  W  +            LGF+V AG   A  
Sbjct: 121 REQVQRAEALYERINSGKSG----VPQSDRWLPVLSKWLPFLIISQLGFLVGAGFDHALG 176

Query: 169 RFFAGAGLPLMLVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAM 228
            F A A L + L L  L   Q  R L+ L Q A +   +PL+  +Y       +++++AM
Sbjct: 177 -FIAAAALAVPLGLAGLQWQQ--RGLKRLLQLASQTTSDPLIARMYTDSRGVEAQLEMAM 233

Query: 229 KMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITA 288
             +Q+ L   + R+QD+++Q+   AK +   + + A+ L  Q +ETEQ+ATAI +M  T 
Sbjct: 234 LSQQAHLKTCLTRLQDTAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINEMAATT 293

Query: 289 TEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIG 348
            E+A N   A++AT  A      G     +T  AI ++A  + +    + QL++ S  IG
Sbjct: 294 QEVASNVALAAEATREASRLTIHGREVTAETRKAIQQLADSVASTGEAVNQLANDSDAIG 353

Query: 349 QVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVIT 408
            V++VI+SIA+QTNLLALNAAIEAARAGD GRGFAVVADEVR+LAQR+ E+T EI ++I 
Sbjct: 354 GVVDVIKSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEIHQLIE 413

Query: 409 SIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMAN 468
            +Q   R+AV+T E+G   +   VD    +   LT +   + +I     QIA+A EE + 
Sbjct: 414 KLQLQARHAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASATEEQSA 473

Query: 469 VTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQFRR 517
           V ++++ +V +I+ ++ +T G A ++      LA     Q +LV +F R
Sbjct: 474 VADEISNNVSTIARLADQTSGDARSSALLSEDLAATAEGQYALVERFNR 522