Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  382 bits (981), Expect = e-110
 Identities = 218/521 (41%), Positives = 320/521 (61%), Gaps = 7/521 (1%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR N PV+ +EV      N+LSTT L   I YA+ +F  ++G++ DEL+ QPHN+VRHPD
Sbjct: 1   MRLNLPVSGREVVVGDTANILSTTDLKGTITYANPDFVAISGFSEDELLGQPHNIVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP  AF D+W+ L+A +SWMGMVKNRCKNGDHYWV AFA+P+  NGKV EYQSVR  P  
Sbjct: 61  MPEAAFADLWQTLQANRSWMGMVKNRCKNGDHYWVSAFATPVSRNGKVKEYQSVRTRPQP 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMP-----RTRLWQRLGLGFIVAAGVSFAADRFFAG-A 174
           + +  A+ LY +++ G+    L+       R  L    G    V  G   AA    A  A
Sbjct: 121 EQIRAAEALYAQLRDGRGAPTLRSSVGLRERLALLAAAGAAGGVVVGTVLAASPIAATLA 180

Query: 175 GLPLMLVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSE 234
           GL L     +  A      L  L+++AR+V DNP+ +L+Y GR D++ +I+ AMKM ++E
Sbjct: 181 GLALGGAAAVAAATALLP-LSRLARQARQVGDNPVSQLIYTGRRDEIGQIEFAMKMLETE 239

Query: 235 LNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHN 294
             A+VGRI DSS Q+ + A+        +  +   Q +ET+ +ATAI QM+ +  E+A N
Sbjct: 240 AGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVALN 299

Query: 295 AQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVI 354
           AQ  ++    A + A  G   V +T  +I  +A+ ++ A+ VI QL + S  I +V++VI
Sbjct: 300 AQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDVI 359

Query: 355 QSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTST 414
             IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR+LA R++ +T +IQ +I S+QT  
Sbjct: 360 HGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTGA 419

Query: 415 RNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMN 474
           R AV+ +++  + +   V +A  +   L+ + S+V++I+  + QIA A+++ ++V E+++
Sbjct: 420 REAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEIS 479

Query: 475 RSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           +S+ SI   S E +    ++Q     +A        LV QF
Sbjct: 480 QSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQF 520