Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  389 bits (998), Expect = e-112
 Identities = 212/522 (40%), Positives = 319/522 (61%), Gaps = 7/522 (1%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR N PVT ++V++    N+LSTT L+  I Y + +F  ++G+   EL+ Q HN+VRHPD
Sbjct: 1   MRMNLPVTGRDVSFSETANILSTTDLNGDITYVNPDFIKISGFEESELIGQHHNIVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP EAF D+W  ++ G+SWMGMVKNRCKNGDHYWV AF +PI  NG+V+EYQSVR  P  
Sbjct: 61  MPTEAFADLWGSVRGGRSWMGMVKNRCKNGDHYWVSAFVTPISRNGRVMEYQSVRTKPQP 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFAGAGLPLML 180
             +  A++LY +++  +TP  L+        R+ L   + A     A     GAG+ + L
Sbjct: 121 AQIAAAERLYAQLRDKRTPVALRRKPLSARSRVALFAALGAAPCVVAGGLLGGAGVAIAL 180

Query: 181 VLTIL-------MAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQS 233
                       +AY     L+ L+++AR+V DNP+ +L+Y GR D+  +I  AMKM ++
Sbjct: 181 ATAAAAALGAGGLAYLALAPLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLET 240

Query: 234 ELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAH 293
           E  A+VGRI D+S Q+ + A        ++  +   Q  ET+Q+ATAI QM  +  E+A+
Sbjct: 241 EAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVAN 300

Query: 294 NAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEV 353
           NAQ  ++A   A +    G   V +T  AIG++A  ++ A  VI +L + S  I +V++V
Sbjct: 301 NAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDV 360

Query: 354 IQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTS 413
           I+ IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA R+ +ST+EI  +I ++Q  
Sbjct: 361 IRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGG 420

Query: 414 TRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDM 473
            R AVE +++  + ++  V++A  +   L  + S+V++I+  ++QIA A+E+ + V+E++
Sbjct: 421 ARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENI 480

Query: 474 NRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           N+++ SI   S   +     ++     +A        LV QF
Sbjct: 481 NQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522