Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  348 bits (892), Expect = e-100
 Identities = 198/521 (38%), Positives = 300/521 (57%), Gaps = 12/521 (2%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR N P+TQ E T+P    L+STT L+SHI Y +  F  ++G+T +ELV QPHN+VRHPD
Sbjct: 1   MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVTLSGFTREELVGQPHNLVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP   F  MWE +K GK WMG+VKNR K GD+YWV A+ + + ENG++V Y+SVR  P+R
Sbjct: 61  MPASVFAHMWETIKQGKPWMGVVKNRSKQGDYYWVSAYVTAVYENGRIVGYESVRSLPTR 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRT----RLWQRLGLGFIVAAGVSFAADRFFAGAGL 176
             V  A+ LY  ++AGK              R    +     +A GV +  D   +   +
Sbjct: 121 DQVRRAEALYARLRAGKAAVSASSSAAYHLIRQLPMILCALALAVGV-YLLDDLPSIIMI 179

Query: 177 PL-MLVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSEL 235
           P+ M+VL + +  +    +    +E  K F + L+ L Y+      +++ LAM   ++ L
Sbjct: 180 PIVMVVLGVFLEVRQRSSIRKTLEEHPKAFTSALIALTYSDSRGPQAQLDLAMLSEEARL 239

Query: 236 NAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNA 295
              + R+ D+   + + A  S+Q S   A++LD Q  E +Q ATAI QM  T  E+ HN 
Sbjct: 240 QTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQEVTHNV 299

Query: 296 QAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQ 355
           Q  + A   A   A+ G    ++++ AI  MA+ +    + + +L+  +  IG V++VI 
Sbjct: 300 QNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDIGNAVGELADATQSIGSVVDVIT 359

Query: 356 SIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTR 415
           SIA+QTNLLALNAAIEAARAG+QGRGFAVVADEVR LA R+  ST++IQ++ITS++    
Sbjct: 360 SIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQIITSLRDGAD 419

Query: 416 NAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNR 475
            AV+T  +G ++S   V +       L  +   V+ IT  ++Q+A+A EE ++V E +++
Sbjct: 420 RAVKTASKGEQISQESVASVEAVQKALDGISQSVTRITGMSQQMASASEEQSHVAETISQ 479

Query: 476 SVQSISDVSTETLGLAE------NTQNECRQLAHNLAQQTS 510
            +  I+ +  E+   A+      +   E  Q  H+LA++ S
Sbjct: 480 QITRIAQLCDESASQAQQGSQISSELEEMAQYLHSLAERFS 520