Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  295 bits (756), Expect = 2e-84
 Identities = 188/521 (36%), Positives = 285/521 (54%), Gaps = 15/521 (2%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           M  ++P+ Q+E+       L+STT L   I YA+  F  ++GY+  ELV   HN+VRHPD
Sbjct: 4   MSKHRPINQREIRLNQDDELISTTDLRGVITYANPRFIQISGYSKQELVGHSHNIVRHPD 63

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP +AF ++W  LKAG+SW G+VKNR K+G  YWVDAF +PI E GK+V YQSVR  P  
Sbjct: 64  MPADAFAELWSKLKAGQSWRGLVKNRAKDGSFYWVDAFVTPIFEAGKIVGYQSVRRMPQT 123

Query: 121 QHVDNADKLYKEIKAGK-TPWQLKMPRTRLWQRL----GLGFIVAAGVSFAADRFFAGAG 175
           + V+ A ++Y+ ++ GK  P  L + + R+   L    GLG     G+ +      AGA 
Sbjct: 124 EWVNRATRIYQRLQQGKGLPRHLSLGQKRIISALVATTGLGI---CGLLWGPGVMVAGAL 180

Query: 176 LP-LMLVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSE 234
           L  + L +    A++   RL  L QE    FD+ +   VY G  D  S +   + ++Q+ 
Sbjct: 181 LMGVNLAIFYDEAFRIPARLMALQQE----FDS-VSRHVYCG-YDTSSILDFQLLLQQAR 234

Query: 235 LNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHN 294
           +  V+GR QD ++Q+   A+     S  T  +LD Q R+ EQLA A+ +M  T  E+A N
Sbjct: 235 MQGVLGRSQDQALQLQRIAENLVVASGQTEASLDMQHRQLEQLACAMEEMTATIGEVALN 294

Query: 295 AQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVI 354
           ++  S+    A+   +   HA+ +    I  +A  +  A+S  E+L+ ++  +   M  I
Sbjct: 295 SRQTSEKIRDAQQLCQHNAHAMSEKRVRIANLADAVAEAASNAEKLNREAEKVASAMSEI 354

Query: 355 QSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTST 414
            +IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR L+ R+ +ST  I   +  + +  
Sbjct: 355 DAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQQSTMSISRSVEQMFSML 414

Query: 415 RNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMN 474
            +  E + +  + + +C      S D +  +  Q+S+I    EQ A A  +   V  DMN
Sbjct: 415 GSWAEEMGRSQQEAEACARAIAESVDDIQNIHVQISEIHDFAEQNAVASAQQETVVADMN 474

Query: 475 RSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           +++Q I+  + + L           +L  +  + +SL   F
Sbjct: 475 QNLQQIAHGANDNLAAMSLVGKATLELQSSADKASSLRQTF 515