Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  340 bits (873), Expect = 6e-98
 Identities = 186/510 (36%), Positives = 298/510 (58%), Gaps = 5/510 (0%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MRNNQPVT +EV       +LSTT L   IKY +++FC++AG+  +ELV++PHN++RHPD
Sbjct: 1   MRNNQPVTLREVELDNEAIILSTTDLKGRIKYVNQDFCNIAGFREEELVHEPHNLIRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MPP AFK +W  ++ G+ WMG+VKNRCKNGD+YWVDA+ +P+ E+G+V EYQSVR   + 
Sbjct: 61  MPPAAFKMLWSRIREGRPWMGLVKNRCKNGDYYWVDAYVTPVYEDGEVHEYQSVRRKVNA 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFAGAGLPLML 180
           +H + A+ LY E+     P  L+  R  +  +L L   +  GVS  A ++     L L+L
Sbjct: 121 KHRERAESLYAELVKDPQPAILRDSRFGVCGKLMLWMALMLGVSAVAAQWSLWLVL-LLL 179

Query: 181 VLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVG 240
            + +L        L  L+ EAR +  +P+   VY GR D++ ++ LAM+   +E   V+G
Sbjct: 180 PIALLGCRSLLAPLRELASEARSIIQDPVARAVYTGRRDEIGDLMLAMRFMTNETGGVMG 239

Query: 241 RIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAASD 300
           R+ DS+  +   +       A +A+  D Q ++T+Q A A+ +++++  E+  +  A   
Sbjct: 240 RMADSTETMANQSNDLLDAIARSAERADGQRQQTQQAAAAVEELHVSFAEVKEHTLAVVS 299

Query: 301 ATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQ 360
                ++A   G   + +   A+ ++  QM    +V+ +++S S  I QV+EVI +IAEQ
Sbjct: 300 DVEQCQSAMGLGQQQLAEVELAMQQLQHQMSLCDAVVREIASDSQAINQVLEVIGTIAEQ 359

Query: 361 TNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVET 420
           TNLLALNAAIEAARAG+ GRGFAVVADEVR+L+ R+ EST +I+ ++   Q+ST  A   
Sbjct: 360 TNLLALNAAIEAARAGESGRGFAVVADEVRQLSGRTGESTGQIEGIVRKFQSSTARAEAN 419

Query: 421 IEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSI 480
           ++   +   +             AL   ++ I   ++  A A+ E ++    ++ S+Q+I
Sbjct: 420 LDNSQQQLKTLAARLGQVQQAFGALEGAINTIKSLSDHSAHAMTEQSSAAGSISDSLQTI 479

Query: 481 SDVSTETLGLAENTQNECRQLAHNLAQQTS 510
           ++++   L    N   E  QL   +++ +S
Sbjct: 480 NELAEAVL----NQSREAEQLGARMSRLSS 505