Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  325 bits (832), Expect = 3e-93
 Identities = 182/517 (35%), Positives = 285/517 (55%), Gaps = 1/517 (0%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MRNNQPV   EV       LLSTT L  +I YA+++FC + G++ +ELV QPHN+VRHPD
Sbjct: 1   MRNNQPVIDNEVVLTDDDILLSTTDLKGNIGYANEDFCRICGFSEEELVRQPHNIVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP  AF  +W+ L   +SW+G+VKNRCK+G +YWV+A+ +P+ ENG+V EYQSVR   S+
Sbjct: 61  MPKAAFAILWQRLAQKQSWLGVVKNRCKDGSYYWVNAYVAPVMENGQVKEYQSVRRRASQ 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFAGAGLPLML 180
             V+ A  +Y+ +   +   ++K  +     +L L  ++   ++           L    
Sbjct: 121 AQVERASDIYQSLNKSEQRSEIKDAKLGYGGKLTLFAVLCLLLAIGLSNISPWLALICAP 180

Query: 181 VLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVG 240
           +L I M       L  L+ +A  +  +P+   +Y GR D+L  IQ AM+   +E+  VVG
Sbjct: 181 LLAIGMRLLLAP-LRALNDQALTIVSDPVARHIYAGRRDELGNIQFAMEFTTAEIAGVVG 239

Query: 241 RIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAASD 300
           R+ D+S  I   +     +   TAD  D Q ++T Q A A+ ++  +  E+    +  S 
Sbjct: 240 RMTDASSVIARDSDALLGSITATADRADGQNQQTAQAAAAVEELTASFNELGQQLKQVSA 299

Query: 301 ATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQ 360
               ++ A   G   ++  V +I E+ +++   + V+ ++   S  I QV+EVI  IAEQ
Sbjct: 300 DVEASQAAVLQGYEQLDAVVASIDELHNEVGNFAQVVSEIEHDSVAINQVLEVITKIAEQ 359

Query: 361 TNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVET 420
           TNLLALNAAIEAARAG+ GRGFAVVADEVR+L+ R+ +ST +I  +I   Q ST NA  T
Sbjct: 360 TNLLALNAAIEAARAGESGRGFAVVADEVRQLSARTADSTSQIDAIIAKFQQSTANAANT 419

Query: 421 IEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSI 480
           +  G + +   V     +      L++++  I    E  A A++E      D++ S+Q+I
Sbjct: 420 LTAGQRQATQAVQLVKQAEAVFAELVTRIDKINQMTELSADAMQEQGLAAVDISDSLQAI 479

Query: 481 SDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQFRR 517
           S++++E    ++  +    + +    +   L  QF R
Sbjct: 480 SELASEGFAQSQADRQLGERSSLKSMESRQLARQFWR 516