Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  363 bits (933), Expect = e-105
 Identities = 200/517 (38%), Positives = 301/517 (58%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           M+NNQPVTQKE  +     LLSTT L   IKYA+  F  V+ +T DEL  QPHN+VRHPD
Sbjct: 1   MKNNQPVTQKEKVFAADTILLSTTDLKGKIKYANAGFTQVSEFTQDELYRQPHNIVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MPP AF+ MW  LK GK W+G+VKNR K+GDHYWV+A+ +P+ E G+V EYQSVR   ++
Sbjct: 61  MPPAAFESMWSRLKQGKPWIGIVKNRAKSGDHYWVNAYVAPVFEGGQVHEYQSVRRKATQ 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFAGAGLPLML 180
             +DNA  LY E+ AGK P  LK  R    +RLGL  +++ GV  A   +     L L  
Sbjct: 121 AQIDNAQALYGELNAGKRPRALKAARLGFGKRLGLVLLLSLGVGVALAGYSPLLALLLAT 180

Query: 181 VLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVG 240
            L +       +    L ++A  + D+PL   VY GR D+L ++  A++   +E    VG
Sbjct: 181 GLGLGGLSLILKPFNALVEQASGIIDDPLATAVYCGRQDELGKLSFALQYLLTETGGAVG 240

Query: 241 RIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAASD 300
           R+ DS+  I E +   ++  + T D  D+Q+++T Q ATA+ +M+ +  E++ N Q A++
Sbjct: 241 RMADSAESIQELSVSLNETISHTRDRADSQSQQTSQAATAVEEMSASFNEVSQNIQHAAE 300

Query: 301 ATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQ 360
               +  AA  G   + + + AI  +  ++   S+V+  +   S  I +V+EVI+ IAEQ
Sbjct: 301 EMSMSHEAAEKGHELLVEVIQAIKGLHQEVSNFSAVVASIEQDSQEINEVLEVIRGIAEQ 360

Query: 361 TNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVET 420
           TNLLALNAAIEAARAG+ GRGFAVVADEVR+L+ R++EST  I+ +++  + ST  A +T
Sbjct: 361 TNLLALNAAIEAARAGESGRGFAVVADEVRQLSSRTSESTSHIEAIVSKFRDSTLKASQT 420

Query: 421 IEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSI 480
           ++ G + +   V  A         L + +  I   ++  A A+ +   V  ++++S+Q I
Sbjct: 421 MQAGQRQAQHSVGLAQQVDASFEELRASIDKINQMSDANAAAMSQQTAVASEISQSIQLI 480

Query: 481 SDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQFRR 517
           ++++  +L   +       Q+    A+   L  QF R
Sbjct: 481 NELALASLSQTQAAAERGGQVERLSAKTHHLSQQFWR 517