Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  286 bits (732), Expect = 1e-81
 Identities = 179/548 (32%), Positives = 288/548 (52%), Gaps = 43/548 (7%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           M+NN PVTQ EV +     ++S T L   I YA+  F +++G+T DEL+ + HN+VRHPD
Sbjct: 1   MKNNLPVTQVEVPFIKGKYIVSKTDLKGIITYANDTFVELSGFTRDELIGKNHNLVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MPP AF D+W  +K G+ W G+VKNRCKNGDHYWVDA   P+++ G+ + Y SVR  PSR
Sbjct: 61  MPPAAFADLWISVKEGRPWRGIVKNRCKNGDHYWVDALVVPVRQKGQTIGYMSVRTEPSR 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRL--------------------GLGFIVA 160
             V +A+ LY ++  G       +PR   W+++                    G+G    
Sbjct: 121 AQVQSAEALYAKLGKGGG----AIPRPGGWRKVSLRKKMAGLTLFVMAAQLLTGIGVWFG 176

Query: 161 AGVSFAADRFFAGAGLPLMLVLTILMA--------YQFTRRLETLSQEARKVFDNPLMEL 212
           +G+ F+AD   A   L  +L LT L+A            R ++  +    +V    L E 
Sbjct: 177 SGIGFSADSIVA---LVQILSLTGLVAGAVQIGLQQGIFRAIDATNSSLDRVAQGDLSED 233

Query: 213 VYNGRVDDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTR 272
           +++ R+D++ ++Q ++   Q+ L  ++  I +++ ++       +   ++ +   ++Q+ 
Sbjct: 234 LWHDRLDEVGKLQDSLLTTQAHLKVMLAEIAEAANRVSGNTTQLNLEMSSVSSQSESQSD 293

Query: 273 ETEQLATAITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTV----DAIGEMAS 328
              ++A ++ +M+ T  +++ +AQ     T  A    R+ +  VEQ +    +A   + S
Sbjct: 294 SVSRIAASMEEMSATVEQVSADAQ----ETASAVGTTRERIAGVEQRMIQGREASRAVVS 349

Query: 329 QMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADE 388
            + TAS+ +  L      IG V + IQ IA+QTNL+ALNAAIEAARAG+ GRGFAVVADE
Sbjct: 350 AVDTASNTMATLFQSLNRIGVVTQGIQEIADQTNLIALNAAIEAARAGEAGRGFAVVADE 409

Query: 389 VRKLAQRSTESTKEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQ 448
           VRKLA+R+   T EI E++T IQ  T +AV +IE          +    +G  L  ++  
Sbjct: 410 VRKLAERTRLQTAEIAEMVTEIQKITESAVGSIESAGAQVGHNDEAMGETGVSLAEVVQD 469

Query: 449 VSDITMRNEQIATAIEEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQ 508
              I      IA A  + +  ++D+  SV  I+ +  E        +   +QL     + 
Sbjct: 470 GQHIDEMARHIAQATVQQSQASQDVAMSVSEIAALIEENAAAIGEAERNVQQLLATAGEL 529

Query: 509 TSLVAQFR 516
            +L+A F+
Sbjct: 530 RNLIAYFQ 537