Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 955 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  163 bits (413), Expect = 2e-44
 Identities = 95/252 (37%), Positives = 140/252 (55%), Gaps = 29/252 (11%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR N PVT  EV       ++S T L   I Y +++F +++G+T  EL+ +PHN+VRHPD
Sbjct: 1   MRTNLPVTNVEVPLRDDTLIVSKTDLKGQITYINRDFIEISGFTEAELIGEPHNIVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP EA+ DMW HLKAG+ W G+VKNRCKNGDHYWV+A A+PI+EN +VV Y SVR  PSR
Sbjct: 61  MPSEAYADMWTHLKAGRPWTGLVKNRCKNGDHYWVEANATPIRENDQVVGYMSVRRKPSR 120

Query: 121 QHV---DNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFA----- 172
             V   +NA +L++E +AG               R+  G +V  G S   DRF +     
Sbjct: 121 DQVEAAENAYRLFRENRAGSL-------------RILCGKVVRGGPSL-GDRFASLSLAT 166

Query: 173 --GAGLPLMLVLTILMAYQFTRRLETLSQEARKVFDN---PLMELVYNGRV--DDLSEIQ 225
             G G  L ++  +++       L   ++   + F +   P+  L   G++  D+ +++ 
Sbjct: 167 RLGLGFGLAVLFAVVVGVLGLYALNNTNESLERAFTDRLQPVQGLARIGKLVADNRAQVL 226

Query: 226 LAMKMRQSELNA 237
           L ++      NA
Sbjct: 227 LGLQHEPGTSNA 238



 Score =  126 bits (317), Expect = 3e-33
 Identities = 90/281 (32%), Positives = 144/281 (51%), Gaps = 31/281 (11%)

Query: 234 ELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAH 293
           +L  +V RI+ ++  I  AA+  +  +   +   + Q    E+ A+++ Q+  T  + A 
Sbjct: 645 QLKEIVERIKGATEAINTAAQEIASGNTDLSSRTEEQASSLEETASSMEQLTSTVKQNAD 704

Query: 294 NAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEV 353
           NA+ A++    A+  A  G   VEQ V  +G               +   S+ I  ++ V
Sbjct: 705 NARTANELASGAQQVAVKGGEVVEQVVQTMGA--------------IHHSSSKIADIIGV 750

Query: 354 IQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTS 413
           I  IA QTN+LALNAA+EAARAG+QGRGFAVVA EVR LAQRS  + KEI+ +I+     
Sbjct: 751 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIS----- 805

Query: 414 TRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDM 473
             ++VE +E G++L    VD+A  + +++   + +V+ I      IA A  E +   E +
Sbjct: 806 --DSVEKVENGSRL----VDSAGRTMEEVVTSIKRVAKIM---ADIAEASREQSAGIEQV 856

Query: 474 NRSVQSISDVSTETLGLAENTQNECRQL---AHNLAQQTSL 511
             +V  + +V+ +   L E        L   AH L +  S+
Sbjct: 857 GLAVSQMDEVTQQNAALVEEAAAAAESLEEQAHGLMEAVSV 897



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 354 IQSIAEQTNLLA---LNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSI 410
           +  +A   N ++   L + IEA  AG  G        +++  A  + E  KEI E I   
Sbjct: 605 LDDVARMLNAMSQGDLTSRIEADYAGTFG--------QLKNDANSTVEQLKEIVERIKGA 656

Query: 411 QTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVT 470
             +   A + I  GN    S  +    S ++  + + Q++    +N   A    E+A+  
Sbjct: 657 TEAINTAAQEIASGNTDLSSRTEEQASSLEETASSMEQLTSTVKQNADNARTANELASGA 716

Query: 471 EDMNRSVQSISDVSTETLGLAENTQNECRQL---AHNLAQQTSLVA 513
           + +      + +   +T+G   ++ ++   +      +A QT+++A
Sbjct: 717 QQVAVKGGEVVEQVVQTMGAIHHSSSKIADIIGVIDGIAFQTNILA 762