Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  210 bits (535), Expect = 9e-59
 Identities = 115/297 (38%), Positives = 175/297 (58%)

Query: 219 DDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLA 278
           D+  ++  +    Q  L+ +V  + +S +Q+  AA+  S  +  +++N++ Q  E  QLA
Sbjct: 248 DEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQNELNQLA 307

Query: 279 TAITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIE 338
           TA+ +M  T  ++A N   A++A   A + A  G   V  ++  I ++A  ++  + VI 
Sbjct: 308 TAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAIEATAVVIR 367

Query: 339 QLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTE 398
           +L   S  IG V+EVIQ IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA+R+ +
Sbjct: 368 KLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQD 427

Query: 399 STKEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQ 458
           ST  I  +I+ +Q     A ET++Q  ++ +  V  A  +G+ +  + S VS I+  N Q
Sbjct: 428 STSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVSCISQMNIQ 487

Query: 459 IATAIEEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           IATA EE   V+E++NR+V +IS  S +    A+     C  L+H   Q   +V +F
Sbjct: 488 IATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQDMVKKF 544



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 63/344 (18%), Positives = 134/344 (38%), Gaps = 42/344 (12%)

Query: 178 LMLVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNA 237
           ++ +L + +A+    +L  L     K+ +N    L+ + R      I L +  R++ELN 
Sbjct: 17  ILSLLVLGVAWFSVVQLAGLHSNTTKITEN----LIPSIRSSAQMHIAL-LDARRNELNM 71

Query: 238 VVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQA 297
           V+  +   S  I    ++S Q   T     +A  ++  +L                N  +
Sbjct: 72  VIDVMTHDSAAI----EISKQRFETAKSEFEAGAQQYAKL----------------NFVS 111

Query: 298 ASDATVHAK--NAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQ 355
             D  +  K   AA     A    V AI +    M +A+ +I+ L+ Q+  +    E   
Sbjct: 112 EQDEQLFIKLGEAAEKYFSAHSSLVSAIDQ--GDMASANIMIKTLTRQTLEVAG--EETM 167

Query: 356 SIAEQTNLLALNAAIEAARAGDQGRGFAVVA--DEVRKLAQRSTESTKEIQEVITSIQTS 413
           ++  + +  A    +++  A    +  +++     +  +   +    ++IQ  I  +   
Sbjct: 168 NLRHENDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQ 227

Query: 414 TRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDM 473
           T   V      NKL+++       + D+   L    +++    + +   + E++N    +
Sbjct: 228 THE-VSAGNLTNKLNMNA-----FARDEFGQLAESFNEM---QDNLHMLVSEVSNSIVQL 278

Query: 474 NRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQFRR 517
           + + + IS V+  +    E  QNE  QLA  + +  + V    R
Sbjct: 279 SSAAEEISSVALHSSNNMETQQNELNQLATAMHEMQATVQDVAR 322