Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  322 bits (825), Expect = 2e-92
 Identities = 188/506 (37%), Positives = 299/506 (59%), Gaps = 28/506 (5%)

Query: 20  LLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPDMPPEAFKDMWEHLKAGKSW 79
           LLSTT L  +IKY ++ F  ++ Y++ EL   PHN+VRH DMP  AFK +W+ +K GK W
Sbjct: 18  LLSTTDLKGNIKYVNQTFSQISEYSVAELQGSPHNIVRHEDMPAAAFKMLWDRIKTGKPW 77

Query: 80  MGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSRQHVDNADKLYKEIKAGKTP 139
           MG+VKN+ KNG +YWV+A+ +P+ E+GK+ EYQSVR   + + +  A+++Y  I  GK  
Sbjct: 78  MGIVKNKTKNGSYYWVNAYVAPVYEDGKIHEYQSVRRQATPEQIRAAEEVYLAINQGKQA 137

Query: 140 WQLKMPRTRLWQRLGLGF----IVAAGVSFAADRFFAGAGLPLMLVLTILMA----YQFT 191
             LK  R        LGF    + A  V+ AA    A     L  ++  L+A    Y+  
Sbjct: 138 KTLKKDR--------LGFRGKILTAMFVAIAATASLACYSPLLAALVGGLIAWFLWYKLM 189

Query: 192 RRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGE 251
           + L+ L   A  + D+P+   +Y GR D++ +I LA++   SE+  VVGR+ DS+ +I E
Sbjct: 190 QPLQALVSVATNIIDDPVAMGIYTGRQDEIGKIDLALRFLISEIGGVVGRMADSASEIQE 249

Query: 252 AAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAASDATVHAKNAARD 311
            +    Q    T ++ D+Q+ +T Q ATA+ QM+ +  E+  N    +   V +  AA+ 
Sbjct: 250 QSVNLKQTITNTWEHADSQSAQTTQAATAMEQMSASFAEVTDNIHRTASEMVSSHEAAQR 309

Query: 312 GMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIE 371
           G   +E  ++AI +++ Q+   S V++ +   S  I QV+EVI++IA+QTNLLALNAAIE
Sbjct: 310 GHSRLETVIEAIHQLSVQVSHFSDVVQTIEQDSQAIHQVLEVIRAIADQTNLLALNAAIE 369

Query: 372 AARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVETIEQGN---KLS 428
           AARAG+ GRGFAVVADEVR+L+ R+++ST +I+ +++  + ST+ A  T+  G    K S
Sbjct: 370 AARAGESGRGFAVVADEVRQLSSRTSQSTSQIELIVSRFRDSTQRATSTMTAGQEQVKRS 429

Query: 429 VSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSISDVSTETL 488
           VS   +A ++      LLS +S I   ++  A A+ +   V  +++R++  ISD++ ++L
Sbjct: 430 VSLAQDASVA---FGELLSSISRINSLSDDNAAAMTQQTTVAAEISRAIHVISDLAQQSL 486

Query: 489 GLAENTQNECRQLA------HNLAQQ 508
              ++      Q++      H+L+QQ
Sbjct: 487 QQTQDAAARGEQVSRLSTKTHHLSQQ 512