Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  302 bits (774), Expect = 2e-86
 Identities = 175/510 (34%), Positives = 274/510 (53%), Gaps = 11/510 (2%)

Query: 10  KEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPDMPPEAFKDM 69
           +E+   P   L+STT     I Y ++ F +V+GY+ DEL+  PHN VRHPDMP  AFK+M
Sbjct: 17  QEIRLTPQDELISTTNTRGIITYVNQRFAEVSGYSADELIGHPHNKVRHPDMPSAAFKEM 76

Query: 70  WEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSRQHVDNADKL 129
           WE LK+G+SW G+VKNRCKNGD YWVDAF SPI ENG +V YQSVRL P   +V  A  +
Sbjct: 77  WEKLKSGQSWRGIVKNRCKNGDFYWVDAFVSPIFENGTIVGYQSVRLQPQAAYVSKATAI 136

Query: 130 YKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFAGAGL----PLMLVLTIL 185
           Y+ +   K    +  P + + +R     + + G+  A   +F G G+     +++ L + 
Sbjct: 137 YRRLLHNK---PIPKPLSLMQKRAVSAVVASTGLLIAG--YFWGWGVIIAGAILMGLNLA 191

Query: 186 MAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVGRIQDS 245
           + Y    R+     + +  +D+ +   +Y G  D  S +   + + Q+++N V+GR QD 
Sbjct: 192 IFYDEAFRIPAKLIDMQTKYDS-ISRYIYAG-ADTSSILDFQLILLQAKMNGVLGRTQDQ 249

Query: 246 SIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAASDATVHA 305
           + Q+   A      +  T  +LD +  + EQLA+A+ +M+ T TE+A N Q  S +   A
Sbjct: 250 ANQLHAIADQLVVTTEQTYASLDQEKNQLEQLASAMEEMSSTITEVAQNTQRTSTSINTA 309

Query: 306 KNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLA 365
                     ++     + ++A  +  A++    L+ ++  +   M  I SIAEQTNLLA
Sbjct: 310 YELCLKSSANMKANTQKVEQLAKSVADAANNANLLNQEAERVASAMGEIDSIAEQTNLLA 369

Query: 366 LNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVETIEQGN 425
           LNAAIEAARAG+QGRGFAVVADEVR L+ R+  ST  I + +  + +      + +EQ  
Sbjct: 370 LNAAIEAARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVDKMFSMLNAWAKEMEQSR 429

Query: 426 KLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSISDVST 485
           + +  C ++   S + +  +  +VS+I    +Q A A ++   V  ++  ++  I+  S+
Sbjct: 430 QHAERCANDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQVVHEITNNIHFITQSSS 489

Query: 486 ETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           E L       +    L HN  +   L   F
Sbjct: 490 ENLAATHQIGDAANHLKHNAEKALGLRRAF 519