Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  397 bits (1021), Expect = e-115
 Identities = 220/519 (42%), Positives = 314/519 (60%), Gaps = 6/519 (1%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR   PVTQ+E  YP  + LLSTT   SHI YA++ FC VAGYTL++++ Q HNMVRHP 
Sbjct: 1   MRKKLPVTQREYDYPADWILLSTTDTQSHITYANQSFCMVAGYTLNDMLGQTHNMVRHPY 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MPP+AF+D+W+ ++ G+ W G+VKNRC NGDHYWVDA+ SPI  NG+V E+QSVR  PSR
Sbjct: 61  MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIMINGQVAEFQSVRTKPSR 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFAGAGLPLML 180
           + +  AD  Y E+        LK       +   LG +    + + A +  A   + L +
Sbjct: 121 EQIQRADSAYAELNKSGHVNALKRILDMPTKLALLGLVALLPMLYLALQMGAMGFVALAI 180

Query: 181 VLTILM--AYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAV 238
            + +L         R   L  +A+K++DNPLM  +Y G+ DDL  I+LA++M+ SEL +V
Sbjct: 181 SVLVLFIGGNLILGRYRALVAKAKKIYDNPLMAYIYTGQSDDLGAIELALQMQNSELKSV 240

Query: 239 VGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAA 298
           +GR +DS  ++ + AK+S+           +Q  E EQ+ATA+ QM  T  +++ N   A
Sbjct: 241 LGRARDSCDKVTQEAKVSAAKGEEIQSTSQSQLAEIEQVATAMQQMTATLVDMSSNCADA 300

Query: 299 SDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIA 358
           + A+  A     +G   V  T+ +I  MA Q+   S VI +L   S  IG+V++VIQ IA
Sbjct: 301 ASASQMASEQTINGDKTVVSTIHSIQTMAQQLHATSKVITELEGHSKDIGRVLDVIQGIA 360

Query: 359 EQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAV 418
           EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+R+ ++TKEI  +I  +Q  T  AV
Sbjct: 361 EQTNLLALNAAIEAARAGELGRGFAVVADEVRALAKRTHDATKEIHSMINLLQLGTNKAV 420

Query: 419 ETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQ 478
            ++ +G + +  C+  A L+G  L  +   ++ IT  N  IA+A+EE ++V  +MNRSV 
Sbjct: 421 RSMHEGVEAASECITTADLAGAALRTIREAIATITDMNHHIASAVEEQSSVANEMNRSVV 480

Query: 479 SISDV--STETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           ++S    S+  LG      N+  ++   +   T LV QF
Sbjct: 481 NVSQFTHSSHQLGCEMVGLND--EVISEMDSHTVLVGQF 517