Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  326 bits (835), Expect = 1e-93
 Identities = 186/504 (36%), Positives = 303/504 (60%), Gaps = 24/504 (4%)

Query: 20  LLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPDMPPEAFKDMWEHLKAGKSW 79
           LLSTT L  +IKY ++ F  ++ Y++ EL   PHN+VRH DMP  AFK +WE +++GK W
Sbjct: 18  LLSTTDLKGNIKYVNQTFSQISEYSVAELQGSPHNIVRHGDMPSAAFKMLWERIRSGKPW 77

Query: 80  MGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSRQHVDNADKLYKEIKAGKTP 139
           MG+VKNR KNG +YWV+A+ +P+ ENGK+ EYQSVR   + + +  A+++Y+ I  G+ P
Sbjct: 78  MGIVKNRTKNGGYYWVNAYVAPVYENGKIHEYQSVRRQATPEQIKAAEEIYQGINQGQQP 137

Query: 140 WQLKMPRTRLWQRLGL-GFIVAAGVSFAADRFFAGAGLPLML-----VLTILMAYQFTRR 193
             LK        RLG  G I+ A +   A   +     P++      +L + + Y   + 
Sbjct: 138 KALKK------DRLGFRGKILMAMLFTIALTAYLATYSPILAALAGGLLALGLWYMLMQP 191

Query: 194 LETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAA 253
            + L Q A  + D+P+   VY GR D++ ++ LA++   +E+  VVGR+ DS+ +I E +
Sbjct: 192 FQALVQVASNIIDDPVAMGVYTGRQDEIGKLDLALRFLITEIGGVVGRMADSASEIQEQS 251

Query: 254 KMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAASDATVHAKNAARDGM 313
               Q    T ++ D+Q+ +T Q ATA+ QM+ +  E+  N    +   V +  AA+ G 
Sbjct: 252 VNLKQTITNTWEHADSQSAQTTQAATAMEQMSASFAEVTDNIHRTASEMVSSHEAAQRGH 311

Query: 314 HAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAA 373
             +E  ++AI +++ Q+   S V++ +   S  I QV+EVI++IA+QTNLLALNAAIEAA
Sbjct: 312 SRLETVIEAIHQLSVQVSHFSDVVQTIEQDSQAIHQVLEVIRAIADQTNLLALNAAIEAA 371

Query: 374 RAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVETIEQGN---KLSVS 430
           RAG+ GRGFAVVADEVR+L+ R+++ST +I+ +++  + ST+ A  T+  G    K SVS
Sbjct: 372 RAGESGRGFAVVADEVRQLSSRTSQSTSQIELIVSRFKDSTQKATSTMTAGQEQVKRSVS 431

Query: 431 CVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSISDVSTETLGL 490
              +A ++      LLS ++ I   ++  A A+ + A+V  +++R++  ISD++ ++L  
Sbjct: 432 LAQDASIA---FGELLSSIARINSLSDDNAAAMTQQASVAAEISRAIHVISDLAQQSLEQ 488

Query: 491 AENTQNECRQLA------HNLAQQ 508
            ++      Q++      H+L+QQ
Sbjct: 489 TQDAAARGDQVSRLSTKTHHLSQQ 512