Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  401 bits (1030), Expect = e-116
 Identities = 227/532 (42%), Positives = 316/532 (59%), Gaps = 32/532 (6%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR N PVTQ+E  YP  + LLSTT   SHI YA+  FC VAGY L  ++  PHNMVRHPD
Sbjct: 1   MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MPP+AF+D+W+ ++ G+ W G+VKNRC NGDHYWVDA+ SPI  NG+V E+QSVR  PSR
Sbjct: 61  MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSR 120

Query: 121 QHVDNADKLYKEIKAGKTPWQLK----MPRT-----------RLWQRLGLGFIVAAGVSF 165
           + ++ A+  Y E+        LK    MP              L+  L +G +   G++ 
Sbjct: 121 EQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVLVALLPMLYLALQIGVVGFVGLAI 180

Query: 166 AADRFFAGAGLPLMLVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQ 225
           +A   F G  L L              R  TL  +A+K++DNPLM  +Y G+ DDL  I 
Sbjct: 181 SALALFIGGNLIL-------------GRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAID 227

Query: 226 LAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMN 285
           LA++M+ SEL +V+GR +DS   + + AK+S+           +Q  E EQ+ATA+ QM 
Sbjct: 228 LALQMQNSELKSVLGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMT 287

Query: 286 ITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSA 345
            T  +++ N   A+ A+  A     +G   V  T+ +I  MA Q++  S VI +L   S 
Sbjct: 288 ATLGDMSSNCADAASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSR 347

Query: 346 MIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQE 405
            IG+V++VIQ IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LAQR+ ++TKEI  
Sbjct: 348 DIGRVLDVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHDATKEIHT 407

Query: 406 VITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEE 465
           +I  +Q  T  AV ++++G   +  C+  A L+G  L  +   ++ IT     IA+A+EE
Sbjct: 408 MINLLQQGTHKAVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEE 467

Query: 466 MANVTEDMNRSVQSISDV--STETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
            ++V  +MNRSV ++S    S+  LG    + N+  ++   +   T LV QF
Sbjct: 468 QSSVANEMNRSVVNVSQFTHSSHQLGCEMVSLND--EVIGEMNSHTVLVGQF 517