Pairwise Alignments

Query, 299 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  162 bits (409), Expect = 1e-44
 Identities = 99/281 (35%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 9   FYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKALLHGA 68
           F  V E  SF+K  ++ G++ + VS+++  LE+ L  +LLYRTTRK+++TE G       
Sbjct: 10  FVAVAETESFTKAGKRLGISTAQVSRQVGALEQRLDTKLLYRTTRKVSMTEEGHLYYRHC 69

Query: 69  KNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVDMSLDN 128
           + V    +EA  A+        G ++M+ P   G+  +   V +F   +P + VD++L N
Sbjct: 70  RQVLDGLEEAERALSSLRGLPQGLLRMTAPVAYGEKYILPVVNDFLLAYPNVEVDIALTN 129

Query: 129 RFVDLVEGGYDLVIRTGYLEDSSLIARHILDSQWVVCASPAYIARNGKPLKPEDLARHNC 188
           R V LV+ G DL IR G L DSSLIA+ I      VCASP Y+ R G+P    +L+RHNC
Sbjct: 130 RQVRLVDAGIDLAIRIGKLADSSLIAKRISQRINYVCASPDYLKRFGEPHSLSELSRHNC 189

Query: 189 LQYAYQTTGATD-WEFKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVPRCLVYHD 247
           L       G  D W F        +K+ G    +    LR AAL G G+  +P   +  D
Sbjct: 190 L------IGNHDYWRFLEQGRERQLKIKGNLRCNTGHGLRDAALKGLGLVQLPNYYIGQD 243

Query: 248 FRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHI 288
            + G LV V         G++A+YP  R    KV+L++E +
Sbjct: 244 LKAGRLVSVLNAYQEPNEGVWALYPQNRHLSPKVKLMVEFL 284