Pairwise Alignments

Query, 299 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  167 bits (423), Expect = 3e-46
 Identities = 99/287 (34%), Positives = 156/287 (54%), Gaps = 1/287 (0%)

Query: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63
           + + +F  V   GSFS  A + G++ S VS ++A LE  LGVQL+ RTTR L+LTEAG  
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 65

Query: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123
           L    + + +  ++A+ +V    +   G +K+ +    G + +  A+  F   HP L + 
Sbjct: 66  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQ 125

Query: 124 MSLDNRFVDLVEGGYDLVIRTGYLEDSSLIARHILDSQWVVCASPAYIARNGKPLKPEDL 183
           +SL +  VD+V  G DL++         ++AR ++  Q+++ ASP YIA++G+P +PE L
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCQFLLVASPDYIAKHGEPSRPEQL 185

Query: 184 ARHNCLQYAYQTTGATDWEFKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVPRCL 243
             HNCL Y  +    + W+FK       + VSG F  DNA AL+ AA+ G G+ Y+   L
Sbjct: 186 VDHNCLVYQGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYLASYL 245

Query: 244 VYHDFRNGELVDVFPE-QVGKKLGIYAVYPFTRQPPNKVRLLIEHIR 289
           +  +   G LV +  + Q+   L + AVYP  +    KV   IE I+
Sbjct: 246 MEDEIAKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFIK 292