Pairwise Alignments

Query, 299 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  227 bits (579), Expect = 2e-64
 Identities = 119/286 (41%), Positives = 175/286 (61%), Gaps = 1/286 (0%)

Query: 6   LILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKALL 65
           L +F  V+E GSFS   ++ GL+ S +SKR+++LE+ LG+QLL RTTR L+LT+AG    
Sbjct: 7   LPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTDAGARYF 66

Query: 66  HGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVDMS 125
              +   Q TQE LDA+    +   G++++SVP + G L +A  +AEF   +P + + M 
Sbjct: 67  EYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQLQMQ 126

Query: 126 LDNRFVDLVEGGYDLVIRTGYLEDSSLIARHILDSQWVVCASPAYIARNGKPLKPEDLAR 185
           +D++  DL+ GG+DL IR G L DSSLIAR I     V+CASPAY+ ++G P+ P +L +
Sbjct: 127 MDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLTQHGLPMTPCELTQ 186

Query: 186 HNCLQYAYQTTGATDWEFKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVPRCLVY 245
           HNCL Y+Y   G  +W F    G   V+  G +  +N+ A+ +A L G GIA +PR +V 
Sbjct: 187 HNCLFYSYFQDG-VEWSFHSPDGMQRVQPKGNYQVNNSDAINQACLDGLGIANLPRFIVE 245

Query: 246 HDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRAR 291
            D + G L  +  +    + GIYAVYP  +  P KV +LIE + A+
Sbjct: 246 PDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLMAK 291