Pairwise Alignments

Query, 247 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., ABC transporter (RefSeq) from Shewanella loihica PV-4

 Score =  219 bits (558), Expect = 5e-62
 Identities = 115/244 (47%), Positives = 160/244 (65%), Gaps = 3/244 (1%)

Query: 3   HGLSKWLWIPLLSLSAAFSVKADTLILTSLDWPPYSGEGLAEKGASIAVVKAAVEAMGHE 62
           H L  +++I  L L    + KA+TL L+SL+WPPYSG  L + GA + V +AA+ AMGHE
Sbjct: 42  HLLCVFIFIATL-LCVVSAPKAETLKLSSLNWPPYSGPTLKDGGACVVVARAALAAMGHE 100

Query: 63  LVVEFYPWSRAVHLA-KGEAKYSGYFPEYFFEDNSLLFSDSIGKGPLGFAENVANPIQWS 121
           L V+++PWSR V +  + ++ Y GYFPEY    +  +FSDS+G+ PLG  E   +PI WS
Sbjct: 101 LQVDYFPWSRTVRVVTRDDSGYQGYFPEYHHPTDKFIFSDSMGQSPLGILEQSQHPITWS 160

Query: 122 VLEDLKPHTIGVVRDYINTPELDSMIAQGQLLSSAVNSDVQNLQKVAKGRVPLAVIDSNV 181
            ++DL  +T+GVVRDY+NT  LD MIA G      V+SD  N++KVA GRV  AV+D  V
Sbjct: 161 RVQDLNAYTLGVVRDYVNTQALDEMIAIGAQPVELVSSDEHNIRKVATGRVQGAVMDLYV 220

Query: 182 FNYLKNNDPSLAADKDQLQMNKQLLVEKDLHIAFRNDAQGQKWQAIVNEGLKKIDIEKIM 241
           + +L    P L+  K +LQ NKQLL  K L+IAFRN   G++W+ I N GL +I +E+++
Sbjct: 221 YQFL-IEQPHLSELKTRLQFNKQLLESKQLYIAFRNTPDGRRWREIYNAGLARIQVEQLL 279

Query: 242 NSYL 245
             YL
Sbjct: 280 EDYL 283