Pairwise Alignments

Query, 247 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 82.0 bits (201), Expect = 1e-20
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 10/190 (5%)

Query: 9   LWIPLLSLSAAFSVKADTLILTSLDWPPYSGEGLAEKGASIAVVKAAVEAMGHELVVEFY 68
           L + LL LS+  S     L L + ++PP+  + L E+G    VVK A +  G+   V FY
Sbjct: 11  LTLILLGLSSP-SFAGRELNLVATNYPPFYADALPEQGGVAQVVKEAFKLQGYNASVTFY 69

Query: 69  PWSRAVHLAK-GEAKYSGYFPEYFFEDNS--LLFSDSIGKGPLGFAENVANPIQWSVLED 125
           P++RA  L K G+A   G    ++ ++      +S  I    + F +   NP+ +S L +
Sbjct: 70  PFARAALLVKTGQA--DGIIGLWYRKEREQWAHYSAPIQAVQIVFYKRKDNPLSFSQLSE 127

Query: 126 LKPHTIGVVRDYINTPELDSMIAQGQLLSSAVNSDVQNLQKVAKGRVPLAVIDSNVFNYL 185
           LKP TIG+ R Y N PE    IA   L +   NSD  NL+K+   R+ L +I  N+  YL
Sbjct: 128 LKPFTIGIGRGYANPPE----IAATGLTTEEGNSDEINLKKLFLKRIDLVLIGHNLAQYL 183

Query: 186 KNNDPSLAAD 195
              + S  AD
Sbjct: 184 IKKNLSEYAD 193