Pairwise Alignments

Query, 247 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., hypothetical ABC transporter protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  207 bits (526), Expect = 2e-58
 Identities = 105/221 (47%), Positives = 144/221 (65%), Gaps = 3/221 (1%)

Query: 7   KWLWIPL-LSLSAAFSVKADTLILTSLDWPPYSGEGLAEKGASIAVVKAAVEAMGHELVV 65
           +W ++   +  S   S +ADT+ LTSL WPPY+G  L ++GAS+AV +AA   M  +L+V
Sbjct: 3   RWFFLLFYVGFSTLQSAQADTVKLTSLLWPPYAGYQLVQEGASVAVARAAFARMDQQLIV 62

Query: 66  EFYPWSRAVHLAK-GEAKYSGYFPEYFFEDNSLLFSDSIGKGPLGFAENVANPIQWSVLE 124
           +FYPWSRA+ LA    + Y GYFPEY+FE +  +FS  IG GPLG  E  ++PI W  L 
Sbjct: 63  DFYPWSRAIKLASMSSSDYIGYFPEYYFETDKFIFSKPIGIGPLGIVEQKSHPISWLHLT 122

Query: 125 DLKPHTIGVVRDYINTPELDSMIAQGQLLSSAVNSDVQNLQKVAKGRVPLAVIDSNVFNY 184
           DL  +T+GVV+DY+NT  LD MI  G        SD QN++KVA GR+  AVID NV +Y
Sbjct: 123 DLNRYTLGVVKDYVNTDSLDLMIVSGNQPVEMATSDEQNIRKVAAGRIDGAVIDINVLHY 182

Query: 185 LKNNDPSLAADKDQLQMNKQLLVEKDLHIAFRNDAQGQKWQ 225
           L    P L    D+LQ+N+QL+  K L++AFRN  +G++W+
Sbjct: 183 LL-KQPHLQPLADKLQVNRQLIANKQLYVAFRNTEEGRRWR 222