Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 612 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  141 bits (355), Expect = 4e-38
 Identities = 90/289 (31%), Positives = 153/289 (52%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           N+F + +R ++  +  ASS L+  ++ + E A        +Q+  +E ++ A  E+  + 
Sbjct: 324 NKFLSAIRQLIQHIGAASSNLQNASRVNSEVANNMNEAAGRQREAVELVSTAFNEMVATA 383

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
             VA++ +  AE A N  R       +I   T +++ +   +   +Q M++L      I 
Sbjct: 384 NEVARSCSGAAESAENGHRRVAEGKQQIEITTDNVNRLGRRLTESSQSMTELEAGSRSIN 443

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
            +L  I  I+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA +TS ST +I+  + 
Sbjct: 444 QILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEIEQLLG 503

Query: 186 NLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRT 245
            L   T  V  ++     L   +   +  ++ S   ++ SV  I +++ QI  +A EQ +
Sbjct: 504 ALGSKTQEVMGKMGSCLELSHASVSSIESTRDSFEGIQLSVNEIRDQNLQISAAAEEQHS 563

Query: 246 AIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFRT 294
             EEI+  I +  + A  V   A    + + ++S++S  +   + +F++
Sbjct: 564 VAEEINRHIQQIYDEARLVESLANSAQDDSGKLSSLSDELNGLVGRFKS 612



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 34/192 (17%), Positives = 73/192 (38%), Gaps = 27/192 (14%)

Query: 2   TQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATEL 61
           ++ INQ   T+R I  + N  +    ++                         AA A + 
Sbjct: 439 SRSINQILGTIRAIAEQTNLLALNAAIE-------------------------AARAGDQ 473

Query: 62  NHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQ-EMSKLLIE 120
               A VA  V   A++  ++T   + ++  +GS T ++       + ++   +S +   
Sbjct: 474 GRGFAVVADEVRALAKRTSDSTGEIEQLLGALGSKTQEVMGKMGSCLELSHASVSSIEST 533

Query: 121 GEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQI 180
            +    +   +N+I +Q   ++  A  + + A E  R    + DE R L    + S +  
Sbjct: 534 RDSFEGIQLSVNEIRDQNLQISAAAEEQHSVAEEINRHIQQIYDEAR-LVESLANSAQDD 592

Query: 181 KANITNLNRATN 192
              +++L+   N
Sbjct: 593 SGKLSSLSDELN 604