Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  144 bits (362), Expect = 7e-39
 Identities = 94/289 (32%), Positives = 156/289 (53%), Gaps = 2/289 (0%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           N     +  ++ +V    +E+  QA Q    + ++   +  Q+ Q+E +A A  +++ + 
Sbjct: 388 NGTVAKIHDLIEQVGRTVAEVERQAGQVETVSAQSNQAVAGQRSQIELVATAMNQMSATA 447

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
             VA++       A +    T +    + S    I+ + +E+ +  Q +++L  + + I+
Sbjct: 448 QEVARSAAAAVSSAHSVNDETLSGRGLVESQQGSIARLASEIDQSVQVINQLATDSQAIS 507

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
            VL+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T QSTE+I+A IT
Sbjct: 508 RVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQQSTEEIEAMIT 567

Query: 186 NLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRT 245
            L+       + +     +   T  +    Q ++ N+  +V MI +++ QI  +A EQ+T
Sbjct: 568 RLHGGVGAAVKAMGTSHEMASGTVGQSEQVQQALENILGAVGMIVDQNQQI-AAAVEQQT 626

Query: 246 AI-EEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
           A+  +I   IVE + A     + A Q    ++ +SA    + + +  FR
Sbjct: 627 AVAHDIDQNIVEINRAGERTAEGAHQTENASRELSAQVVQLKQLINAFR 675



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 17/85 (20%), Positives = 36/85 (42%)

Query: 205 LEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEEISLAIVEASEAANSV 264
           L +  +KV+    ++  V  S + + E  +  + + A+    IE++   + E    A  V
Sbjct: 356 LGQMMDKVAAGDMTVNFVARSKDELGELGEVFNGTVAKIHDLIEQVGRTVAEVERQAGQV 415

Query: 265 YDRAAQNAEGTKRVSAISALIAEHM 289
              +AQ+ +      +   L+A  M
Sbjct: 416 ETVSAQSNQAVAGQRSQIELVATAM 440