Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  137 bits (346), Expect = 4e-37
 Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 10/292 (3%)

Query: 10  TTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVATVA 69
           T    +V  + +AS +L   A +     + +     +Q+ + + +A A  ++  SV  VA
Sbjct: 240 TEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVA 299

Query: 70  QTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKITTVLN 129
                TAE A  A   T      +    + I  +  ++ +    + +L      IT VL+
Sbjct: 300 NNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLD 359

Query: 130 VINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLNR 189
           VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLA +T QST++I   I  L  
Sbjct: 360 VIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQG 419

Query: 190 ATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEE 249
                 E + R      ++ E  + +  S+  + S V  ISE S QI  +A EQ++A+ E
Sbjct: 420 GARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQI-AAAVEQQSAVSE 478

Query: 250 ------ISLAIVEASEAANSVYDRAAQNAEGTKRV-SAISALIAEHMAKFRT 294
                 +S+        AN +  R+ Q+A G   + +++  L+ +   + R+
Sbjct: 479 NINQNIVSIRGGSDHHVANGL--RSRQSASGVAELANSMEVLVQQFWTRRRS 528