Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  142 bits (359), Expect = 1e-38
 Identities = 91/290 (31%), Positives = 156/290 (53%), Gaps = 10/290 (3%)

Query: 3   QGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELN 62
           Q I Q   TLR  + ++  ++++L   A++     +     I QQ  +++  A A TE++
Sbjct: 248 QSIRQMQQTLRDTLQDIQGSATQLASAAEELHAVTQHTAQGIHQQNEEVQMAATAVTEMS 307

Query: 63  HSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGE 122
            +V  VA   N T++ + +A  + D+   ++ +    I  +  ++ +    +++L  E  
Sbjct: 308 AAVDEVAGNANRTSDASRDAETVADDGRRQVTATRQTIDQLSEKLQQTAGTVTRLAEEAA 367

Query: 123 KITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKA 182
            I  V++VI  I++QTNLLALNAAIEAARAGE GRGFAVVADEVRNLA +T  ST++I+ 
Sbjct: 368 SIGQVVDVIRAIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQSSTQEIER 427

Query: 183 NITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAE 242
            I  +  AT     +       +++++E  + SQ+       ++ +I+ER  QI++    
Sbjct: 428 MIGAIQSATEQSVRD-------MQQSSEFATRSQTMAGEADQALGLIAERVGQINEMNLV 480

Query: 243 QRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAIS---ALIAEHM 289
             +A EE +    E      ++ D + Q+A G ++ S  S   A +A H+
Sbjct: 481 IASAAEEQAQVAREVDRNLVAIRDISEQSATGAQQTSVASDELARLATHL 530



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 5/175 (2%)

Query: 117 LLIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVA-DEVRNLAVKTSQ 175
           LLI G     VL  +  IS    L  L  A  +  AG+  R  A    DE+  +     Q
Sbjct: 197 LLIGGGLFAMVL--LRSISRP--LEELKQAAASVAAGDLSRTIACRGKDEITEVQQSIRQ 252

Query: 176 STEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQ 235
             + ++  + ++  +   +      +  + + TA+ +      ++   ++V  +S   D+
Sbjct: 253 MQQTLRDTLQDIQGSATQLASAAEELHAVTQHTAQGIHQQNEEVQMAATAVTEMSAAVDE 312

Query: 236 IHQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMA 290
           +  +A     A  +      +      +      Q +E  ++ +     +AE  A
Sbjct: 313 VAGNANRTSDASRDAETVADDGRRQVTATRQTIDQLSEKLQQTAGTVTRLAEEAA 367