Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  154 bits (388), Expect = 7e-42
 Identities = 92/285 (32%), Positives = 147/285 (51%)

Query: 9   TTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVATV 68
           T +LR +V  ++   S++   A+Q     ++    +  QK + + +A A  E+  +V  V
Sbjct: 361 TVSLRELVGGISEGVSQIASAAEQLSAVTKQTCIGVTSQKDETDQVATAMNEMAATVQEV 420

Query: 69  AQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKITTVL 128
           A+   E ++ A  A +   +    +G A + I  +  E++   Q MS L  E  KI  VL
Sbjct: 421 ARNAQEASQAAAQADQQARSGDEVVGQAITQIEQLAREVLNSTQSMSALKQESNKIVGVL 480

Query: 129 NVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLN 188
           +VI  +S+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +T +STE+I+  I  L 
Sbjct: 481 DVIKSVSQQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEELIAALQ 540

Query: 189 RATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIE 248
             T  V   L     L + T E    +  ++  +  +V  I   ++QI  ++ EQ    E
Sbjct: 541 TGTQQVATTLDSSRTLTDNTVELSRRAGGALEQITRTVATIQHMNEQIATASEEQSVVAE 600

Query: 249 EISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
           +I+  ++   + +      + Q A  +  ++ +   +   + KFR
Sbjct: 601 QINRNVISVRDISEQTAAASEQTAASSVELARLGTHLQTLVGKFR 645



 Score = 34.7 bits (78), Expect = 6e-06
 Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           +T  + +   +   +  ++N   ++L L  +QS E+A   +  ++ Q   L  I     +
Sbjct: 68  ITDRVQKTPESTALVTEKLNEMKAQLTLLHKQSDEEA--TIKLLNGQFETLNRIEKTFAD 125

Query: 61  LNHSVAT---VAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKL 117
           +  +  T   +   + +T+EQAL A    +  V +  S   D S    E   ++Q   ++
Sbjct: 126 VRDNRQTRNQIRTRLEQTSEQALQAIAQVEVEVLKSVSQEQDSSERMEEFTNISQLRQQV 185

Query: 118 LIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQST 177
                ++ T      D  E   + A++ A++      Q +G     + ++ L   T+ + 
Sbjct: 186 QTARYQVQTYTFTTRDADESAAIAAIDEALKEIGQIAQDQG----NESLQGLTPATA-AL 240

Query: 178 EQIKANITNLNRATNTVEEELTRMTGLLEKTAEKV---SHSQSSIRNVKSS 225
           +  +  +    +     E +   M GL E   + V   +H Q++ R+ +++
Sbjct: 241 QSYRERLGEFKQIQTKAEADQEIMEGLGETLLDSVGALNHLQTAQRDSEAA 291



 Score = 27.7 bits (60), Expect = 7e-04
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 182 ANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQ-----I 236
           ++I  LN  T  +  E  R+T  ++KT E  +     +  +K+ + ++ ++SD+     +
Sbjct: 51  SDIAQLNGLTKDLRAE--RITDRVQKTPESTALVTEKLNEMKAQLTLLHKQSDEEATIKL 108

Query: 237 HQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAE 273
                E    IE+    + +  +  N +  R  Q +E
Sbjct: 109 LNGQFETLNRIEKTFADVRDNRQTRNQIRTRLEQTSE 145