Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  147 bits (370), Expect = 9e-40
 Identities = 92/293 (31%), Positives = 158/293 (53%), Gaps = 12/293 (4%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           +++  N+   +LR+++  + + S++L   A+++     +    I +QK Q++ +A A TE
Sbjct: 380 LSRNCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQTTIGIQEQKSQVDQVATATTE 439

Query: 61  LNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSD----ISNMCNEMVRVNQEMSK 116
           L+ S    A  VN +A+ AL+  +  D     + +   +    I ++ +E+ + ++ ++K
Sbjct: 440 LSSS----AHQVNMSADDALSQIKQADEETQHMRTIADENKRTILSLADEVAKASKVINK 495

Query: 117 LLIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQS 176
           +  +   I ++L+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +T  S
Sbjct: 496 VHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDS 555

Query: 177 TEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQI 236
           T +I+  I  L + T      +       +   EK   +  +++ +  SV    +    I
Sbjct: 556 TREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQALQTISHSVHKAYDAGTHI 615

Query: 237 HQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHM 289
            Q+A EQ    +++S    E  E   ++ +  A  AE T + S   A +AE +
Sbjct: 616 AQAAQEQNLVSQQVS----EKLEHIAAISEETALGAEQTAKSSHEVARLAEEL 664



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 38/236 (16%), Positives = 97/236 (41%), Gaps = 6/236 (2%)

Query: 52  ETIAAAATELNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMC-NEMVRV 110
           +T+    +    S    ++ +    + AL  T     +  +I + T+DISN   N++   
Sbjct: 261 DTLVTLKSRQIDSTQLTSEKLTLVEKNALTVTEQMKRLAKDIETVTNDISNQALNDINSA 320

Query: 111 NQEMSKLLIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVA-DEVRNL 169
           +     L++    +  V++       + +L  +N A+    +G+          DE   L
Sbjct: 321 SLRTLILVVIAIVVAVVISFAVVRPLKRSLDEVNGALNVLASGDLTHKLDDTGHDEFAEL 380

Query: 170 AVKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMI 229
           +   ++  + +++ I ++   +N +       + +  +T   +   +S +  V ++   +
Sbjct: 381 SRNCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQTTIGIQEQKSQVDQVATATTEL 440

Query: 230 SERSDQIHQSA----AEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAI 281
           S  + Q++ SA    ++ + A EE       A E   ++   A + A+ +K ++ +
Sbjct: 441 SSSAHQVNMSADDALSQIKQADEETQHMRTIADENKRTILSLADEVAKASKVINKV 496