Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  146 bits (369), Expect = 9e-40
 Identities = 92/292 (31%), Positives = 158/292 (54%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           + + +N     L+ I+  +  A+S L   A +  E   +   ++ +Q+ + E  A A  E
Sbjct: 248 IAKDLNGVVNHLKGILKNIAEAASTLGDSADELNEFTRQANDRMFKQQSETEQTATAMNE 307

Query: 61  LNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIE 120
           +  +VA VAQ+ N  AE A NA          +  + S +S + +++      + +L  E
Sbjct: 308 MTAAVAEVAQSSNSAAESARNADESAARGNSIVQQSISSMSVLASQIQGTAAVIGELATE 367

Query: 121 GEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQI 180
            + I  VL+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +TS+ST +I
Sbjct: 368 SQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTSESTREI 427

Query: 181 KANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSA 240
           ++ I +L +   +    + +    ++   E  + + S+++++ +SV+ I++ +  I  +A
Sbjct: 428 ESMIESLQQGVKSAVNSMEQGIAQVDNANESTNAAGSALQDIVASVDSITQLNTHIATAA 487

Query: 241 AEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKF 292
            EQ    E I+ +I+  S+ A      A   +E   +++ ++  +   +  F
Sbjct: 488 DEQSCVAESINQSIIAISDIAQESTQAANDLSEAVHQLAQLAGHMRTQVGTF 539



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 3/167 (1%)

Query: 124 ITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKAN 183
           +T +   +  I E++++            G   +    V + ++ +    +++   +  +
Sbjct: 217 VTEIRQKLRQIREKSDMTVSFTVFRDDELGHIAKDLNGVVNHLKGILKNIAEAASTLGDS 276

Query: 184 ITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQ 243
              LN  T    + + +     E+TA  ++   +++  V  S    +E +    +SAA  
Sbjct: 277 ADELNEFTRQANDRMFKQQSETEQTATAMNEMTAAVAEVAQSSNSAAESARNADESAARG 336

Query: 244 RTAIEE-ISLAIVEAS--EAANSVYDRAAQNAEGTKRVSAISALIAE 287
            + +++ IS   V AS  +   +V    A  ++   RV  +   IAE
Sbjct: 337 NSIVQQSISSMSVLASQIQGTAAVIGELATESQNIGRVLDVIKSIAE 383