Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  130 bits (326), Expect = 8e-35
 Identities = 99/300 (33%), Positives = 150/300 (50%), Gaps = 22/300 (7%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           N F   L+ +V  + +   +L   + +  +       ++  Q +Q++ IA A   ++ +V
Sbjct: 240 NGFLDHLQGMVGRMASTGDKLTQLSNRLHDSMSGVNNRMKLQHNQIDVIAHAVGNVSDAV 299

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
             ++   N+ +    +A   + +          ++  + N + R      +L  + + I 
Sbjct: 300 RLISDNANDASAAVSDADAKSRDGSALSRKTLDEVLTLANAIERAADASGRLAEDSKSIG 359

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
            VL+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA KT QSTE+I   I 
Sbjct: 360 KVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQQSTEEIHNMIQ 419

Query: 186 NLN-------RATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQ 238
            L         A +T +  +T+     ++T E++         V+ S++ I E S QI  
Sbjct: 420 RLQARSDDAVNAMSTSQTSVTQCVAFTQQTDERLG-------QVRQSLQQIVEISSQIAS 472

Query: 239 SAAEQRTAIEEIS---LAIVEASEAANSVYDRAAQN-AEGTKRVSAISALIAEHMAKFRT 294
           S  EQ  AI EIS   L+I + S+  N   DR     AE T     ++ LI   M +F T
Sbjct: 473 STTEQMQAIGEISQNALSIRQLSDDNNHELDRVVDEVAEAT----GLAGLIHSDMKRFHT 528



 Score = 33.9 bits (76), Expect = 8e-06
 Identities = 20/115 (17%), Positives = 50/115 (43%)

Query: 2   TQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATEL 61
           T+ I+     L+    +  NA S  +    Q     ++   ++ Q +  L+ I   ++++
Sbjct: 411 TEEIHNMIQRLQARSDDAVNAMSTSQTSVTQCVAFTQQTDERLGQVRQSLQQIVEISSQI 470

Query: 62  NHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSK 116
             S     Q + E ++ AL+  +L+D+  HE+     +++        ++ +M +
Sbjct: 471 ASSTTEQMQAIGEISQNALSIRQLSDDNNHELDRVVDEVAEATGLAGLIHSDMKR 525