Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  155 bits (391), Expect = 3e-42
 Identities = 92/271 (33%), Positives = 152/271 (56%)

Query: 12  LRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVATVAQT 71
           LR +V  +   + +L   ++Q+R  +EE    + QQ+  +E ++A+  E+  ++A VA  
Sbjct: 378 LRELVSRIVGITEQLSAASEQTRVASEETNQSLFQQQANIERVSASINEMTATIADVAHN 437

Query: 72  VNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKITTVLNVI 131
             + A+    A  L+     ++ S    I+ + + +      +  + ++ + I+ VL VI
Sbjct: 438 ARQVADSTQAAYGLSQIADKQVRSNIGTINGLASAITEATNVIRSVELQSQGISKVLEVI 497

Query: 132 NDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLNRAT 191
             I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA KT+QST  I+  I  L + T
Sbjct: 498 RGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQKTAQSTRDIEEMIALLQQGT 557

Query: 192 NTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEEIS 251
                 +   T  L++T +    +  +IRN    +E I+  ++QI  +A++Q  A EEIS
Sbjct: 558 QNAVGVMGESTVHLQQTVDSAECTAEAIRNTHIEIESIAANAEQIATAASQQTLAAEEIS 617

Query: 252 LAIVEASEAANSVYDRAAQNAEGTKRVSAIS 282
            ++   S+AA+     + Q A  + ++S ++
Sbjct: 618 QSLAVISDAASVNAASSEQTAVASTQLSELA 648



 Score = 25.8 bits (55), Expect = 0.003
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 2   TQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATEL 61
           T+ I +    L+           E  +  QQ+ + AE     I     ++E+IAA A + 
Sbjct: 543 TRDIEEMIALLQQGTQNAVGVMGESTVHLQQTVDSAECTAEAIRNTHIEIESIAANAEQ- 601

Query: 62  NHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEG 121
              +AT A      ++Q L A  ++ ++   I  A S  +    +    + ++S+L ++ 
Sbjct: 602 ---IATAA------SQQTLAAEEISQSLA-VISDAASVNAASSEQTAVASTQLSELALDL 651

Query: 122 EKITTVLNV 130
           + IT   N+
Sbjct: 652 KSITGRFNI 660