Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 661 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25-INTG

 Score =  142 bits (358), Expect = 2e-38
 Identities = 91/287 (31%), Positives = 152/287 (52%), Gaps = 8/287 (2%)

Query: 5   INQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHS 64
           +N+ T  LR    E+  ++  L + A  +   +E+    +D+QK +L++ A+A T++  +
Sbjct: 372 LNELTAALRKTFRELIGSADALAVTAGSNALNSEQTTRVVDEQKDRLQSAASAMTQMEST 431

Query: 65  VATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKI 124
           V  VA+   +T +   + + LT  V   +     +I    +++ +  Q   +L   G+ I
Sbjct: 432 VEEVARRAQDTRQAVDDTSELTHKVQARVAETIVNIRQQADQVNKATQVTDELQKYGQNI 491

Query: 125 TTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANI 184
             ++  I  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +T  ST +I+  I
Sbjct: 492 EGIVVAIRTIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQTSTSEIQDMI 551

Query: 185 TNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQR 244
             +    ++V   +        +     S +   + ++  SV+ I + + QI  +  EQ 
Sbjct: 552 GLMQEKIHSVVHVMNESQAQSTQCVSLASGAGDLLLSMSDSVDSIRDMNIQIAAATEEQS 611

Query: 245 TAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAK 291
             ++E S  +++       + D A Q A+G ++ SAIS+     MAK
Sbjct: 612 ATVQETSRMVIQ-------INDSAQQTAQGAEQ-SAISSHELSDMAK 650



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 32/248 (12%)

Query: 42  AQIDQQKHQLETIAAAATELNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDIS 101
           AQ+ QQ++ +E    A  +      + +  V   A Q+ NAT  T   +  I    + ++
Sbjct: 263 AQVQQQRNAVEAALKATLDRIGEFGSQSLEVANQASQSANATIGTSRSLLLIACVLAVLA 322

Query: 102 NM---------CNEMVRVNQEMSKLLIEGEKITTVLNVINDISEQTNLLALNAAIEAARA 152
            +             +   +E+ K L  G+     + V  D+S +     L   +    A
Sbjct: 323 AVLIGTWVAFSLRRPLAAFREVLKTLTAGD-----MRVSFDVSRKDEFGELGGYLNELTA 377

Query: 153 GEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLNRATNTVEEELTRMTGL------LE 206
             + + F  +      LAV          +N  N  + T  V+E+  R+         +E
Sbjct: 378 ALR-KTFRELIGSADALAVTAG-------SNALNSEQTTRVVDEQKDRLQSAASAMTQME 429

Query: 207 KTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEEISLAIVEASEAANSVYD 266
            T E+V+      ++ + +V+  SE + ++    AE    I + +  + +A++  + +  
Sbjct: 430 STVEEVAR---RAQDTRQAVDDTSELTHKVQARVAETIVNIRQQADQVNKATQVTDEL-Q 485

Query: 267 RAAQNAEG 274
           +  QN EG
Sbjct: 486 KYGQNIEG 493