Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  158 bits (400), Expect = 2e-43
 Identities = 94/284 (33%), Positives = 151/284 (53%)

Query: 11  TLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVATVAQ 70
           TL  +VV V + +  L   A     + +E+  QI+QQ   L+++A A  E+  S   V+ 
Sbjct: 195 TLTELVVTVKDNAETLHHTASSFASENQESERQIEQQYQSLDSVATAMEEMTASAGEVSN 254

Query: 71  TVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKITTVLNV 130
             N + E+    ++        +  A  DI  +   + + +  +S L +   KI  V+  
Sbjct: 255 ISNSSVEKVEQNSQSIRQSYERVQKAIKDIEQLSGFIEQTSDSVSTLKVNATKINEVITT 314

Query: 131 INDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLNRA 190
           IN ISEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA +T  +T +I+A I NL + 
Sbjct: 315 INAISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQSATVEIQAMIENLQQE 374

Query: 191 TNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEEI 250
           TN ++    R     E +   ++   + +  +  S + + + S QI  S+ EQ     +I
Sbjct: 375 TNNIDNITQRTVKQAESSQSLITEIGTDVSAINESSQSVIDMSFQIAASSEEQSAVANDI 434

Query: 251 SLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFRT 294
           +  + E  + AN + + A Q++ G  ++S  S  + + +A+++T
Sbjct: 435 ASELSEIRQQANVIKELANQSSIGVSQLSQASESLGKILARYQT 478



 Score = 38.5 bits (88), Expect = 3e-07
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 28/196 (14%)

Query: 5   INQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHS 64
           IN+  TT+  I  + N  +    ++                         AA A E+   
Sbjct: 308 INEVITTINAISEQTNLLALNAAIE-------------------------AARAGEMGRG 342

Query: 65  VATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKI 124
            A VA  V   A +  +AT     ++  +   T++I N+    V+  +    L+ E   I
Sbjct: 343 FAVVADEVRTLASRTQSATVEIQAMIENLQQETNNIDNITQRTVKQAESSQSLITE---I 399

Query: 125 TTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANI 184
            T ++ IN+ S+    ++   A  +          A    E+R  A    +   Q    +
Sbjct: 400 GTDVSAINESSQSVIDMSFQIAASSEEQSAVANDIASELSEIRQQANVIKELANQSSIGV 459

Query: 185 TNLNRATNTVEEELTR 200
           + L++A+ ++ + L R
Sbjct: 460 SQLSQASESLGKILAR 475



 Score = 37.0 bits (84), Expect = 9e-07
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 190 ATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERS-DQIHQSAAEQRTAIE 248
           A +   + LT +   ++  AE + H+ SS     +S    SER  +Q +QS     TA+E
Sbjct: 188 ALDNAMDTLTELVVTVKDNAETLHHTASSF----ASENQESERQIEQQYQSLDSVATAME 243

Query: 249 EISLAIVEASEAANSVYDRAAQNAEGTKR 277
           E++ +  E S  +NS  ++  QN++  ++
Sbjct: 244 EMTASAGEVSNISNSSVEKVEQNSQSIRQ 272