Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  141 bits (356), Expect = 3e-38
 Identities = 88/266 (33%), Positives = 139/266 (52%)

Query: 15  IVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVATVAQTVNE 74
           +V  +  ASS++R   Q  R+ A+E      +Q+  L+++A A  E+  +V  VA+   +
Sbjct: 221 LVSRMTQASSQIRTVVQAFRQTAQEGQTLAAEQRQHLDSLATAMEEMTAAVKEVARNAEQ 280

Query: 75  TAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKITTVLNVINDI 134
           ++ +   A +  +    +I      I ++ NE+   +  ++ L     KI  V+  IN I
Sbjct: 281 SSNETQEANQQVEAGSKDIAITVQAIGDLANEIGDASTAVNTLNDNAAKIDEVVTTINAI 340

Query: 135 SEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLNRATNTV 194
           SEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T  +T +IK+ I  L   ++ +
Sbjct: 341 SEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQTGSHAL 400

Query: 195 EEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEEISLAI 254
            + + R     +   + V  +   ++ +    E + E S  I  SA EQ     EI+  +
Sbjct: 401 TQVMKRTVEKAQDGKQHVLETGEDLKAIAHHSERVYEMSVLIATSAEEQSAVANEIATNL 460

Query: 255 VEASEAANSVYDRAAQNAEGTKRVSA 280
           +E    ++ V   A Q+  G   + A
Sbjct: 461 MEIRNQSHDVEQSANQSVSGCDELHA 486



 Score = 30.4 bits (67), Expect = 9e-05
 Identities = 20/114 (17%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 9   TTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAAT---ELNHSV 65
           T  +++++  +   S  L    +++ EKA++    + +    L+ IA  +    E++  +
Sbjct: 383 TVEIKSMIEALQTGSHALTQVMKRTVEKAQDGKQHVLETGEDLKAIAHHSERVYEMSVLI 442

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLI 119
           AT A+  +  A +         N  H++  + +   + C+E+    +++ +LL+
Sbjct: 443 ATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELHATAEQLDQLLV 496