Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  142 bits (358), Expect = 2e-38
 Identities = 87/288 (30%), Positives = 155/288 (53%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           N+F   ++ +V  V+ + +  R  A+   + + +        + + +++A A  E++ + 
Sbjct: 260 NEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSVATAINEMSMAS 319

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
           + VA      A+ A +A    D+ V  +  A + I  + NE+     E   L I   KI 
Sbjct: 320 SEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISSGKIG 379

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
            +L+VI  I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA +T +ST++I A I 
Sbjct: 380 QILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQEINAIIE 439

Query: 186 NLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRT 245
            +  + ++V   + R     E+T  + S    +++ +KSS+  IS+ + QI  +  EQ  
Sbjct: 440 AIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATATEEQSA 499

Query: 246 AIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
            I E+++ +   ++ +     ++ +    ++++ + SA +   ++ F+
Sbjct: 500 VIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTFK 547



 Score = 30.4 bits (67), Expect = 9e-05
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 187 LNRATNTVEEELTRMTGLLEKTAEKVSHSQS---SIRNVKSSVEMISERSDQIHQSAAEQ 243
           L +   +  E + ++  L+   +  V+HS+     + ++ +   M++       QS A  
Sbjct: 252 LKQVAASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSVA-- 309

Query: 244 RTAIEEISLAIVEASEAANSVYDRA-AQNAEGTKRVSAISALIAE 287
            TAI E+S+A  E +  A    D A + + E    V+ +   +A+
Sbjct: 310 -TAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAK 353