Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (371), Expect = 7e-40
 Identities = 88/297 (29%), Positives = 161/297 (54%), Gaps = 8/297 (2%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           +++  N+   +LRT++  + + S++L   A+++     +  A I +QK+Q++ +A A T+
Sbjct: 381 LSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQ 440

Query: 61  LNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSD----ISNMCNEMVRVNQEMSK 116
           L+ S    A  V+ +A++ALN  R  D     + +   +    I  + +E+ +  Q ++K
Sbjct: 441 LSSS----AMQVSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINK 496

Query: 117 LLIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQS 176
           +  +   I ++L+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +T  S
Sbjct: 497 VHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDS 556

Query: 177 TEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQI 236
           T++I+  I  L + T      +           EK   +  ++ ++ ++V    +    I
Sbjct: 557 TQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHI 616

Query: 237 HQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
             +A EQ    +++S  +   +  +      A Q A+ + +V+ ++  +   + +F+
Sbjct: 617 ANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEFK 673