Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  142 bits (358), Expect = 2e-38
 Identities = 94/278 (33%), Positives = 152/278 (54%), Gaps = 7/278 (2%)

Query: 3   QGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELN 62
           +  NQF   L+ I+ +V  A+ E++  A     +      Q+    ++ + +  A TE++
Sbjct: 263 RAFNQFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQVVTAITEMS 322

Query: 63  HSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGE 122
            + + VA +  + AE    AT+   N    + S+  ++S +  E+      ++ L  + +
Sbjct: 323 ATASEVAMSTTQVAEATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQ 382

Query: 123 KITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKA 182
           KI +VL+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +T  ST +I  
Sbjct: 383 KINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINE 442

Query: 183 NITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQS---SIRNVKSSVEMISERSDQIHQS 239
            ++ L+   N V   ++ M    +     V+ S++   S+  V S+V  I++ S QI  +
Sbjct: 443 MLSELH---NLVSLAVSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIATA 499

Query: 240 AAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKR 277
           A EQ +  EEI+  +    E  N +  +A+ +A  T +
Sbjct: 500 ATEQSSVTEEINRNVFAIQEIVNELL-QASNSASDTSQ 536



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 17/101 (16%), Positives = 45/101 (44%)

Query: 163 ADEVRNLAVKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNV 222
           +DE+  L    +Q  ++++  I ++ RAT  V+     ++      A+++    +    V
Sbjct: 255 SDEIAMLGRAFNQFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQV 314

Query: 223 KSSVEMISERSDQIHQSAAEQRTAIEEISLAIVEASEAANS 263
            +++  +S  + ++  S  +   A +  +  +  A E  +S
Sbjct: 315 VTAITEMSATASEVAMSTTQVAEATQAATQDVGNAQECVDS 355



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 9   TTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNH---SV 65
           T  +  ++ E++N  S      + S++    +V         L  + +A T +N     +
Sbjct: 437 TLEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQI 496

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLL 118
           AT A   +   E+          +V+E+  A++  S+    +    + +  L+
Sbjct: 497 ATAATEQSSVTEEINRNVFAIQEIVNELLQASNSASDTSQGLANEGRNLDTLV 549