Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (372), Expect = 5e-40
 Identities = 100/297 (33%), Positives = 159/297 (53%), Gaps = 8/297 (2%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           ++ GINQF   L+ ++ EV  AS+ +    ++   + E N   +     + E I AA  E
Sbjct: 338 ISMGINQFIANLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEE 397

Query: 61  LNHSVATVAQTVNETAE--QALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLL 118
           ++ +   VAQ  +ETA   Q  N   L    V  +  AT  ++ +  E+     ++ ++ 
Sbjct: 398 MSATANDVAQNGSETASFTQLTNEQALASKQV--VAQATETVNRLVREVEHTADKIGQID 455

Query: 119 IEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTE 178
            +   IT VL VI DI++QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T  ST 
Sbjct: 456 RDTINITQVLKVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTA 515

Query: 179 QIKANITNLNRATNTV--EEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQI 236
           +I+  ++NL  A+N+     E+T+ T L  +TA       + +  + SSV  I++ + QI
Sbjct: 516 EIEETLSNLRDASNSAIHSMEVTKQTCL--ETASTTERVATDLDAIGSSVNQINDLNTQI 573

Query: 237 HQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
             +A EQ +   EI+  +    + AN +      +   T  ++  +  + + + +F+
Sbjct: 574 ATAAEEQSSVSAEITRNMSAICDMANELARSGESSRNETVNLATANQQLEQIVGQFK 630