Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (378), Expect = 8e-41
 Identities = 97/292 (33%), Positives = 148/292 (50%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           + +  N+    L  +V EV+N+  +L   A++    A  +   ++ Q+++L  +A A  E
Sbjct: 253 LAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQNELNQLATAMHE 312

Query: 61  LNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIE 120
           +  +V  VA+  N+ A  A  A+         +  +   I  +   +      + KL  +
Sbjct: 313 MQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDD 372

Query: 121 GEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQI 180
              I  VL VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T  ST  I
Sbjct: 373 SRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHI 432

Query: 181 KANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSA 240
            + I+ L    N  EE + +   ++ +T  K   +  SI  + SSV  IS+ + QI  + 
Sbjct: 433 NSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVSCISQMNIQIATAT 492

Query: 241 AEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKF 292
            EQ    EE++  +   S A+  V   A Q A     +S ++  + + + KF
Sbjct: 493 EEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQDMVKKF 544



 Score = 23.9 bits (50), Expect = 0.009
 Identities = 12/87 (13%), Positives = 36/87 (41%)

Query: 175 QSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSD 234
           Q  E       NL+   + V   + +++   E+ +    HS +++   ++ +  ++    
Sbjct: 252 QLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQNELNQLATAMH 311

Query: 235 QIHQSAAEQRTAIEEISLAIVEASEAA 261
           ++  +  +      + + A  +AS+ A
Sbjct: 312 EMQATVQDVARNTNDAANAATQASDTA 338