Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  164 bits (414), Expect = 6e-45
 Identities = 91/293 (31%), Positives = 164/293 (55%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           +  G N+F   L  ++  ++N + +L  QA+ S   A +N  +I+ Q+ ++  +A A TE
Sbjct: 337 LASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTE 396

Query: 61  LNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIE 120
           +  +   +A     TA+ A NA  L+++   ++  +   I N+ NE+    + +S+L   
Sbjct: 397 MASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEH 456

Query: 121 GEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQI 180
            +KI ++L  I+ I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ +T  ST++I
Sbjct: 457 SQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEI 516

Query: 181 KANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSA 240
           +A I  L +      + +T+   + E +    + +  S+  +  ++  IS+ + QI  +A
Sbjct: 517 QAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAA 576

Query: 241 AEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
            EQ +   EI+       E + ++   A      ++ ++ ++A + + +++F+
Sbjct: 577 EEQTSVTSEINRNTESIREVSENLSIEAQSAMVQSQELAHLAASLQQEVSRFK 629



 Score = 28.1 bits (61), Expect = 5e-04
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 171 VKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMIS 230
           + T+ S ++I    +  NR    +   ++RM  +  +   +   S +S  +    +E+  
Sbjct: 325 IHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQ 384

Query: 231 ERSDQIHQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRV 278
           +    +  +  E  +A EEI+     A   A +  +  + +  G K+V
Sbjct: 385 DEVTMVATAVTEMASATEEIA---SNAEHTAQTAQNAVSLSNHGQKQV 429