Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (359), Expect = 1e-38
 Identities = 88/291 (30%), Positives = 155/291 (53%)

Query: 3   QGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELN 62
           +  N F   L+ I+ +V +A+++++  A    ++ +   +Q+    ++ + +  A TE++
Sbjct: 263 RAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMS 322

Query: 63  HSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGE 122
            + + VAQ   + AE    AT    N    + ++  +I+ +  ++      +  L  + +
Sbjct: 323 STASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQINHAAGSIKSLSEQSQ 382

Query: 123 KITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKA 182
           KI +VL+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +T  ST +I  
Sbjct: 383 KINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINE 442

Query: 183 NITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAE 242
            ++ L++  +   + +        ++ E       S+ +V S+V  I++ S QI  +A E
Sbjct: 443 MLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSVTSAVTAINDMSTQIATAATE 502

Query: 243 QRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
           Q +  EEI+  +    E  N +   +   A  ++ VS     +   + +F+
Sbjct: 503 QSSVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQEGTNLGNLVGQFK 553