Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  160 bits (404), Expect = 9e-44
 Identities = 90/293 (30%), Positives = 161/293 (54%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           +  G N+F   L  ++  ++  + +L  QAQ S   A +N  +I  Q+ ++  +A A TE
Sbjct: 337 LASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTE 396

Query: 61  LNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIE 120
           +  +   +A     TA+ A +A  L+++   ++  +   I N+ NE+    + +S+L   
Sbjct: 397 MASATEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEH 456

Query: 121 GEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQI 180
            +KI ++L  I+ I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ +T  ST++I
Sbjct: 457 SQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEI 516

Query: 181 KANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSA 240
           +A I  L +      + +T+   + E +    + +  S+  +  ++  IS+ + QI  +A
Sbjct: 517 QAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAA 576

Query: 241 AEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
            EQ +   EI+       E + ++   A  +    + ++ ++A + + + +F+
Sbjct: 577 EEQTSVTSEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRFK 629



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 171 VKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMIS 230
           + T+ S ++I    +  NR    +   ++RM  +  +   +   S +S  +    + +  
Sbjct: 325 IHTANSHDEIGILASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQ 384

Query: 231 ERSDQIHQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRV 278
           +    +  +  E  +A EEI+     A   A +  D    +  G K+V
Sbjct: 385 DEVTMVATAVTEMASATEEIA---SNAEHTAQTAQDAVGLSNHGQKQV 429