Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1247 a.a., sensory box/GGDEF domain/EAL domain protein from Pseudomonas fluorescens FW300-N2E2

 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 27/216 (12%)

Query: 30  WPPFVMENAQQK--GLS---VDIVTAAFATQGYTVEFTIMPWSRALNDVKEGKIDILPAT 84
           WPPF   + Q +  GL+   VDI+    A +   +E   + W+  L  V +GKID+LP  
Sbjct: 46  WPPFEFRDDQGRYQGLAADYVDIIRERLAIKLTPIE--PVSWTAVLEQVAQGKIDLLPGI 103

Query: 85  WFTQERTAYLTYSDNYLTNQVKFIKKAGDNFEFAGLASLNGKKVGIVRGYGYGDEFMN-D 143
             T ER  YL ++  YL   +  +   G    +  L  L G K+ +V  Y   +   N  
Sbjct: 104 MSTPERQNYLAFTRPYLDFPIVILAHRGGAQPY-NLKELYGLKIAVVENYAPHELLRNHH 162

Query: 144 PSFFRPESTDLKQNLQKLQAGRIDLAVEDELVAKSIITEAGMNLADFAFTNQAISENPLH 203
           P        ++   LQ L    +D  V D  +A S+ +   + L     +     E P  
Sbjct: 163 PDLNLVALPNVSSALQALATDEVDAVVGD--LASSVWSLRQLKLEGLYVS----GETPYR 216

Query: 204 VTSGKANPRSEELVAAFNKGLAEIKANGTFDKLLAD 239
                A PR  +++             G  DK++AD
Sbjct: 217 YQLAMAVPRDNKILV------------GILDKVMAD 240