Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Pseudomonas stutzeri RCH2

 Score = 60.8 bits (146), Expect = 2e-14
 Identities = 69/258 (26%), Positives = 111/258 (43%), Gaps = 32/258 (12%)

Query: 2   MKSIATLISVVLCSFSAWAQTITA------AQDPWPPFVMENAQQK--GLSVDIVTAAFA 53
           MKS   ++     S     Q   A       +  +PPF + +A  K  G  +DI  A  A
Sbjct: 1   MKSYKKILLTAAASLIIGTQAFAAEKLRIGTEGAYPPFNLIDASGKVVGFDLDISHALCA 60

Query: 54  TQGYTVEFTIMPWSRALNDVKEGKIDILPATW-FTQERTAYLTYSDNYLTNQVKFIKKAG 112
                 E     W   +  +  GK D L A+   T+ER   + ++D+Y TN+++F+  A 
Sbjct: 61  KMKVECEVVTSDWDGIIPALNAGKFDFLAASMSVTEERKNAVDFTDHYYTNKLQFV--AP 118

Query: 113 DNFEF-AGLASLNGKKVGIVRGYGYG-------DEFMNDPSFFRPESTDLKQNLQKLQAG 164
            N EF      L GK +G  R    G       D  ++   +   E+  L      L +G
Sbjct: 119 KNVEFQTDEGYLKGKVIGAQRATIAGTWLEDNLDRVVDIKLYDTQENAYL-----DLASG 173

Query: 165 RIDLAVEDELVA-KSIITEAGMNLADFAFTNQAI-SENPLHVTSGKANPRSEELVAAFNK 222
           R+D  + D  V  + + ++AG N   F F  + +  ++ + +   K N   +EL    NK
Sbjct: 174 RVDGILADTFVQWEWLKSDAGKN---FEFKGEPVFDDDKIAIAVRKGN---DELRERLNK 227

Query: 223 GLAEIKANGTFDKLLADY 240
            LAEI A+GT+ ++   Y
Sbjct: 228 ALAEIIADGTYKQINDKY 245