Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., ABC-type amino acid transport/signal transduction system (RefSeq) from Shewanella amazonensis SB2B

 Score = 60.1 bits (144), Expect = 4e-14
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 14/236 (5%)

Query: 11  VVLCSFSAWAQTIT-AAQDPWPPFVMENAQQKGLSVDIVTAAFATQGYTVEFTIMPWSRA 69
           ++L    A A TI+  A    PP+++E+A+  GL V+I+ AAFA  G    F      R 
Sbjct: 18  LLLVMVGAHASTISIGASSNRPPYILEDAES-GLEVEIIRAAFAAVGMEASFKFYSRKRQ 76

Query: 70  LNDVKEGKIDILPATWFTQERTAYLTYSDNYLTNQVKFIKKAGDNFEFAGLASLNGKKVG 129
           L    + + D +     + + T Y   SD Y+  Q   I  A        +A L    + 
Sbjct: 77  LLFYGKERFDGIMTVNSSLDLTGYP--SDIYIYYQNVAISLAEKQIRLERVADLQNISIA 134

Query: 130 IVRGYGY--GDEF--MNDPSFFRPESTDLKQNLQKLQAGRIDLAVEDELVAKSIITEAGM 185
                    G EF  ++  + +R   T   QN + L  GRID+AV +    K +     +
Sbjct: 135 AFEDASILLGGEFYKVSKRTIYRELDTTENQN-KMLYLGRIDVAVAE----KYVFLANNL 189

Query: 186 NLADFAFTNQAISENPLHV-TSGKANPRSEELVAAFNKGLAEIKANGTFDKLLADY 240
            LA    T++A+  + L   T+ +   R+  +  AFN+GL +I+ NG +D L+  +
Sbjct: 190 RLAGELDTSKALDIHELFPRTAYRLMFRNSIVRDAFNEGLRKIRENGRYDALVKQF 245