Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., amino acid ABC transporter (RefSeq) from Shewanella amazonensis SB2B

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 27/249 (10%)

Query: 5   IATLISVVLCSFSAWAQTIT-----AAQDPWPPFVMENAQQKGLSVDIVTAAFATQGYTV 59
           + +++S+V   FS    +       AA+D WPPF   +A  +GLS  ++  AFA +G  V
Sbjct: 6   LRSVMSIVFLLFSTMVSSNETSIRLAAEDSWPPFA--DAAGEGLSHRLIAKAFALEGIYV 63

Query: 60  EFTIMPWSRALNDVKEGKIDIL----------PATWFTQERTAYLTYSDNYLTNQVKFIK 109
           +  ++P++R L   ++GK++ +             WF +E     T S   L+      K
Sbjct: 64  DTLVVPYNRGLILTEQGKVNAVFNVAMQQNTRERFWFGEEPLFVATASFYQLSRNAPLAK 123

Query: 110 KAGDNFEFAGLASLNGKKVGIVRGYGYGDEFMNDPSFFRPESTDLKQNLQKLQAGRIDLA 169
              D +           +VGIVRGY YGDEF   P+       +  Q +  L   ++D  
Sbjct: 124 ---DKWSLP-----KDTRVGIVRGYEYGDEFDRLPNMVLKIVDNQYQLINLLLTDKVDAV 175

Query: 170 VEDELVAKSIITEAGMNLADFAFTNQAISENPLHVTSGKANPRSEELVAAFNKGLAEIKA 229
           V  + VA   +   G++    A      SE  L +   K NP S  L  A +KGL ++KA
Sbjct: 176 VMYDRVAAQFLYTMGVSGEVRAVMANHSSE--LFLAFDKHNPDSPALADALDKGLRQLKA 233

Query: 230 NGTFDKLLA 238
           +G +  L+A
Sbjct: 234 SGEYHSLIA 242