Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.9 bits (224), Expect = 2e-23
 Identities = 68/235 (28%), Positives = 105/235 (44%), Gaps = 2/235 (0%)

Query: 7   TLISVVLCSFSAWAQTITAAQDPWPPFVMENAQQKGLSVDIVTAAFATQGYTVEFTIMPW 66
           TLI + L S S   + +      +PPF  +   ++G    +V  AF  QGY    T  P+
Sbjct: 12  TLILLGLSSPSFAGRELNLVATNYPPFYADALPEQGGVAQVVKEAFKLQGYNASVTFYPF 71

Query: 67  SRALNDVKEGKIDILPATWFTQERTAYLTYSDNYLTNQVKFIKKAGDNFEFAGLASLNGK 126
           +RA   VK G+ D +   W+ +ER  +  YS      Q+ F K+  +   F+ L+ L   
Sbjct: 72  ARAALLVKTGQADGIIGLWYRKEREQWAHYSAPIQAVQIVFYKRKDNPLSFSQLSELKPF 131

Query: 127 KVGIVRGYGYGDEFMNDPSFFRPESTDLKQNLQKLQAGRIDLAVEDELVAKSIITEAGMN 186
            +GI RGY    E +        E    + NL+KL   RIDL +    +A+ +I +    
Sbjct: 132 TIGIGRGYANPPE-IAATGLTTEEGNSDEINLKKLFLKRIDLVLIGHNLAQYLIKKNLSE 190

Query: 187 LAD-FAFTNQAISENPLHVTSGKANPRSEELVAAFNKGLAEIKANGTFDKLLADY 240
            AD F      I+    H+    A      L+A FNKGL  ++ +G    +L+ Y
Sbjct: 191 YADLFEQVGDPIATEVFHLGVSLAITDQATLIAEFNKGLESMRKDGRLANILSQY 245