Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 67.4 bits (163), Expect = 3e-16
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 5/180 (2%)

Query: 8   LISVVLCSFSAWAQTITAAQDPWPPFVME--NAQQKGLSVDIVTAAFATQGYTVEFTIMP 65
           L+++V   F   AQ + A    +     +  N +  GL VDI+      Q  T+ + I P
Sbjct: 12  LLTLVCLGFPVKAQELLAVGTHFSQIFEQQSNGEYTGLGVDILNRFAKQQQVTIHYQITP 71

Query: 66  WSRALNDVKEGKIDILPATWFTQERTAYLTYS-DNYLTNQVKFIKKAGDNFEFAG-LASL 123
           W RA + V+ G+ DIL   + ++ER   L +S   +  +++ F  +      + G  AS+
Sbjct: 72  WRRAQSMVERGQADILIGPYVSEERQKRLAFSAQPFYRDEIVFYARVNSPTSWDGSYASI 131

Query: 124 NGKKVGIVRGYGYGDEFM-NDPSFFRPESTDLKQNLQKLQAGRIDLAVEDELVAKSIITE 182
           N  ++G ++G+ YG  F          E TDLK  +++L  G +DL   +    ++++ +
Sbjct: 132 NRLRIGKMQGWSYGYLFTERTKELTINEFTDLKSGIERLSRGDLDLLATNVRNTQAVLAQ 191