Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., hypothetical amino acid ABC transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 83.2 bits (204), Expect = 5e-21
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 26/231 (11%)

Query: 21  QTIT-AAQDPWPPFVMENAQQKGLSVDIVTAAFATQGYTVEFTIMPWSRALNDVKEGKID 79
           QTIT AA+D WPPF  +  Q  G+S  ++ AAF      V   ++P+SRAL   ++G +D
Sbjct: 52  QTITLAAEDSWPPFANQFGQ--GISHQLIEAAFKQTQIEVNSLVVPYSRALMMAEKGAVD 109

Query: 80  -ILPATWFTQERTAYLTYSDNYLTNQVKFIKK------AGDNFEFAGLASLNGKKVGIVR 132
            +   T        ++  +      +  F ++      A + ++        G  +G+++
Sbjct: 110 GVFNVTREASTEQRFVFGNTPLFAAKASFYQRKKLPLIAENKWQIP-----KGSMIGVIK 164

Query: 133 GYGYGDEFMNDPSFFRPESTDL------KQNLQKLQAGRIDLAVEDELVAKSIITEAGMN 186
            Y YGDEF   P   +    +L      +Q +  L  GRID AV  +LVA+  + + G++
Sbjct: 165 SYEYGDEF---PKLVKQRQLNLVTVATQQQLINLLLIGRIDAAVMFDLVAQENLQKMGVS 221

Query: 187 LADFAFTNQAISENPLHVTSGKANPRSEELVAAFNKGLAEIKANGTFDKLL 237
              F   +  IS+  +++   K NP++  L  A ++GL+ +K NG + +LL
Sbjct: 222 DEVFPAFDNHISQ--IYLAFSKENPKATLLAKALDQGLSMLKENGQYQQLL 270