Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.0 bits (232), Expect = 3e-24
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 23  ITAAQDPWPPFVM---ENAQQKGLSVDIVTAAFATQGYTVEFTIMPWSRALNDVKEGKI- 78
           +  A+D W P+     ++ Q  GL+ ++V A FAT+   + F  +P++R ++D K GK+ 
Sbjct: 26  VIGAEDDWAPYCALDKQSGQPLGLAPELVKAVFATEKLEIAFRPLPFARCMHDAKSGKVV 85

Query: 79  DILPATWFTQERTAYLTYSDNYLTNQVKFIKKAGDNFEFAGLASLNGKKVGIVRGYGYGD 138
               AT   + R  Y  +        +     A +      L+SL GK+VGI  GY Y  
Sbjct: 86  GCFNATITEENRNQYYWHKTPMFEEDLAIFALASEPNRDLQLSSLEGKRVGITLGYTYPT 145

Query: 139 EFMNDPSFFRPESTDLKQNLQKLQAGRIDLAVEDELVAKSIITEAGMNLADFAFTNQAIS 198
           +FM++    R E+    Q L+ L  GR+D  + + +     I +    L         IS
Sbjct: 146 DFMDNTKITRFEAKSDAQILEMLVRGRVDYILMNGMPGYLQIQQ--RQLTGKVIKVGKIS 203

Query: 199 ENPLHVTSGKANPRSEELVAAFNKGLAEIKANGTFDKLLADYGIK 243
            +   +   + +P+ E +   F +GL +IK NGT++ L+ D+  K
Sbjct: 204 TDGFWLAFSRTHPQGEAMSKQFEEGLQKIKNNGTYELLIRDFEAK 248